PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011079795.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 555aa    MW: 61710.9 Da    PI: 5.3727
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011079795.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-09485533348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lvd+v+++G g+W+ I r        Rt  ++k++w+++l
   XP_011079795.1 485 PWTLSEVVKLVDGVAKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 533
                      8****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.52478537IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-13480537IPR009057Homeodomain-like
SMARTSM007171.1E-9482535IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-16484538IPR009057Homeodomain-like
CDDcd116601.48E-18484534No hitNo description
PfamPF002493.5E-7485533IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MGTLVDIVGN EEAGVDCIIS HKAADPVVYQ LARVDGDGRL VPATEDEVMA VEDLLEEDKS  60
NVRTLDTGQI LECSTNGSEG QPQLEILEIG TEKPNIPPHP MMDSEEVDVH PKERIPSLVC  120
HGSDGSVCQS GSPGECSKTF SELDRSKTNS SFDTGMKPDF SLLNGEIHLD NLSVKDLQET  180
FKATFGRETS VKDKQWLKRR IIMGLTNSCD FSTTSFVIID NRVGRKQKTE TCESVDCSVL  240
FDCVVTSAME NHESPSTSHD KKSEIHSIAN ETNMESSTFQ DKSGGKDAET EERPAKRIRK  300
PTKRYIEELS EGESRDSGAK IVSSVKHPAY DQPSAKVWAR PVQNFGLDRR YLTRKDSLGG  360
SGIQIPYVSR IRRSRPRENL MNLMKLQPSG EGISISLEKN DVASSTQLDK ECGNNAPKNS  420
LSPRWIEEPP VVASERSTPY TERTTIQLEE EVKLKNVESY RNNSDEEVVT VPTANGGMRR  480
KHHRPWTLSE VVKLVDGVAK YGAGRWSEIK RLAFASYSYR TSVDLKDKWR NLLRASLAEL  540
PTGNGYSAQW TDFSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011079795.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079795.10.0uncharacterized protein LOC105163216 isoform X2
TrEMBLA0A0K1SBL30.0A0A0K1SBL3_REHGL; Telomere repeat-binding factor like-protein
STRINGMigut.D00942.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-99TRF-like 6