PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011079624.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 251aa MW: 28170.4 Da PI: 8.0326 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.2e-19 | 71 | 119 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg++ taeeAa+a+++ ++k++g XP_011079624.1 71 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNTAEEAARAYDREARKIRG 119 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.6E-38 | 70 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-22 | 70 | 128 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.749 | 70 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-32 | 70 | 128 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.72E-32 | 71 | 128 | No hit | No description |
PRINTS | PR00367 | 1.3E-11 | 71 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-12 | 71 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MCGGAILAGL IPRRRVSSTD LCPTSADFWP TAFSCSNDQN STPPLKRPRP STGDEPAEKP 60 VAKKKQRKNL YRGIRQRPWG KWAAEIRDPR KGVRVWLGTY NTAEEAARAY DREARKIRGK 120 KAKVNFPNED VDYSYSYNAN PGKPYNIGHS YSEFNQAGLE NELYSAHNAG EVKHHDLNGN 180 GKNSTKAVIE FEVPPEADNE VQKLSEELMA YENYMKFYQI PYLDGQSPAA PTNPPPETVE 240 LWSFDEVSGG L |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-21 | 71 | 129 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 45 | 49 | KRPRP |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011079624.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079624.1 | 0.0 | ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | A0A2G9I323 | 1e-121 | A0A2G9I323_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D00130.1.p | 1e-101 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7118 | 23 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47520.1 | 6e-40 | ERF family protein |