PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011079598.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GATA | ||||||||
Protein Properties | Length: 130aa MW: 14396.7 Da PI: 10.5562 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.5 | 1.8e-18 | 24 | 58 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs C+tt TplWR gp g+k+LCnaCG++y kk++ XP_011079598.1 24 CSDCHTTRTPLWRGGPAGPKSLCNACGIKYNKKRR 58 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.5E-12 | 18 | 76 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.571 | 18 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.08E-13 | 19 | 58 | No hit | No description |
CDD | cd00202 | 1.44E-12 | 23 | 74 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-15 | 23 | 58 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 24 | 49 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.8E-16 | 24 | 58 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MDLKVDKKAD SEEKNINSSS LKSCSDCHTT RTPLWRGGPA GPKSLCNACG IKYNKKRRQL 60 LGLDTGRSNR KKKRTSVSRS DQVGEILKMR FMALGSDMVL QRSGKLMSKL REEEQAAILL 120 MALSCGSVYA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 73 | KRRQLLGLDTGRSNRKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011079598.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079598.1 | 7e-91 | GATA transcription factor 15 | ||||
Swissprot | Q8LG10 | 4e-33 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A2G9G6U2 | 3e-84 | A0A2G9G6U2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D00108.1.p | 5e-76 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8503 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 2e-35 | GATA transcription factor 15 |
Publications ? help Back to Top | |||
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