PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011079486.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

SBP

Protein Properties

Length: 986aa MW: 109946 Da PI: 6.13

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011079486.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.3	3.3e-41	145	222	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C adls+ak+yhrrhkvCe+hska+++lv++++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ XP_011079486.1 145 VCQVDDCGADLSKAKDYHRRHKVCEMHSKASKALVANQMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQT 222 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.6E-34	141	207	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.103	143	220	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.67E-38	144	225	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.2E-30	146	219	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.98E-7	745	874	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.3E-5	763	879	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.14E-7	764	874	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 986 aa Download sequence Send to blast
MEEARFGAQP QLYYGMPSTD LRAMAKRGIE WDPNDWRWDG DLFIATPLHP TSSNFQSRQL 60 FPLQTQLTTT VASSNSCSSF SDELDQPTVK DNRELEKKRR VQDNNLSADN LTLNLGGRGY 120 AVSANTEPTT GKKTKLAAPT PNRAVCQVDD CGADLSKAKD YHRRHKVCEM HSKASKALVA 180 NQMQRFCQQC SRFHALQEFD EGKRSCRRRL AGHNKRRRKT QTENVSNSSP INDNQASGYL 240 LMSILKILSN MHSNRSNQTD DQDLLSHLLQ TLASQGPFRR NISAHLQESQ DLLNNLPSLG 300 NSESVPALLS NDSLGQRSMQ EHCTTTGDEM PRKIGDLQAS SQRPGIVLHT QATSQIYDQG 360 RETSGGRSKL NNFDLNDIYV DSDDGMDDIE RSTVPQGLGI GCPSWAQQES HQSSPPQTSG 420 NSDSASAQSP SSSSGEAQSH TDRIVFKLFG KEPSDFPIVL RAQIFDWLSH SPTDIESYIR 480 PGCVILTIYL RLSESSWEEL YCDLSSSLNR LLNIYDDVYF WSTGWIYARV QNQMAFVYNG 540 QVVVNTSLPL GTDNYTTILS VKPIAVASSG QAQFFVKGIN LSRPSTRLLC ALDGNYVEAS 600 TELVEHVDGL EGSVQYLKFS CSVPAVTGRG FIEVEDHGLS SSFFPFIVCE DDVCTEICML 660 EKEIELTDID NLHRGRFYAR NQAMEFIHEM GWLLHKLQSK LRFGHEGPNL GSFPFERFKY 720 LVEFSMDHDW CSVVNKLLDI LFYGIVSGGE QPFVKFALSE MGLLHRAVRR NSRSLVEMLL 780 RYVPEEVADE LSSEYQSLVE IDKSSLFRPD VAGPGGLTPL HVAAGRDGSE DILDALTDDP 840 GKVGIGAWKS ALDSTGFTPE DYARLRGHYS YIHLVQRKIN RRVSSGHVVV DISDTVSDSS 900 INQKPNMEPP ASFEIGIKGI QRPCGVCAQN MAYRTGSRTL LYRPAMLSML AIAAVCVCVA 960 ILMKSLPRVL FVFRPFSWEM LEYGSS

Sequence ? help Back to Top

Protein Sequence Length: 986 aa Download sequence Send to blast

MEEARFGAQP QLYYGMPSTD LRAMAKRGIE WDPNDWRWDG DLFIATPLHP TSSNFQSRQL  60
FPLQTQLTTT VASSNSCSSF SDELDQPTVK DNRELEKKRR VQDNNLSADN LTLNLGGRGY  120
AVSANTEPTT GKKTKLAAPT PNRAVCQVDD CGADLSKAKD YHRRHKVCEM HSKASKALVA  180
NQMQRFCQQC SRFHALQEFD EGKRSCRRRL AGHNKRRRKT QTENVSNSSP INDNQASGYL  240
LMSILKILSN MHSNRSNQTD DQDLLSHLLQ TLASQGPFRR NISAHLQESQ DLLNNLPSLG  300
NSESVPALLS NDSLGQRSMQ EHCTTTGDEM PRKIGDLQAS SQRPGIVLHT QATSQIYDQG  360
RETSGGRSKL NNFDLNDIYV DSDDGMDDIE RSTVPQGLGI GCPSWAQQES HQSSPPQTSG  420
NSDSASAQSP SSSSGEAQSH TDRIVFKLFG KEPSDFPIVL RAQIFDWLSH SPTDIESYIR  480
PGCVILTIYL RLSESSWEEL YCDLSSSLNR LLNIYDDVYF WSTGWIYARV QNQMAFVYNG  540
QVVVNTSLPL GTDNYTTILS VKPIAVASSG QAQFFVKGIN LSRPSTRLLC ALDGNYVEAS  600
TELVEHVDGL EGSVQYLKFS CSVPAVTGRG FIEVEDHGLS SSFFPFIVCE DDVCTEICML  660
EKEIELTDID NLHRGRFYAR NQAMEFIHEM GWLLHKLQSK LRFGHEGPNL GSFPFERFKY  720
LVEFSMDHDW CSVVNKLLDI LFYGIVSGGE QPFVKFALSE MGLLHRAVRR NSRSLVEMLL  780
RYVPEEVADE LSSEYQSLVE IDKSSLFRPD VAGPGGLTPL HVAAGRDGSE DILDALTDDP  840
GKVGIGAWKS ALDSTGFTPE DYARLRGHYS YIHLVQRKIN RRVSSGHVVV DISDTVSDSS  900
INQKPNMEPP ASFEIGIKGI QRPCGVCAQN MAYRTGSRTL LYRPAMLSML AIAAVCVCVA  960
ILMKSLPRVL FVFRPFSWEM LEYGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-31	145	219	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011079486.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011079486.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A2G9I468	0.0	A0A2G9I468_9LAMI; Uncharacterized protein
STRING	VIT_07s0005g02260.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]