PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011079434.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 166aa MW: 18584.6 Da PI: 9.1795 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 49 | 71 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_011079434.1 49 FSCNYCRRKFYSSQALGGHQNAH 71 89******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.92E-6 | 46 | 76 | No hit | No description |
PROSITE profile | PS50157 | 11.053 | 49 | 76 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 51 | 71 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 166 aa Download sequence Send to blast |
MNYHEPNTSL NLSLSLRTIN LDLVLLQDRS SSPNSSSSPP LSPVEARVFS CNYCRRKFYS 60 SQALGGHQNA HKLERTLAKK SREFSSVVRP HSALMSRPQG FSPGRVHGLV FGLEHQGSPG 120 RFGKREINFG SNWSGSSHEY DHGDKSNVHD HQDDQELSQL DLSLRL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011079434.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079434.1 | 1e-119 | zinc finger protein 2-like | ||||
TrEMBL | A0A2G9GDP7 | 3e-45 | A0A2G9GDP7_9LAMI; Uncharacterized protein | ||||
STRING | VIT_11s0052g01120.t01 | 3e-40 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8876 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57520.1 | 2e-20 | zinc finger protein 2 |