PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011079125.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | WOX | ||||||||
Protein Properties | Length: 263aa MW: 28425.6 Da PI: 6.3524 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.8 | 1.2e-15 | 28 | 88 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++ XP_011079125.1 28 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 88 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 107.4 | 8.9e-35 | 27 | 90 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q XP_011079125.1 27 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 90 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.337 | 24 | 89 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-13 | 24 | 95 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.8E-6 | 26 | 93 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-8 | 27 | 93 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.5E-13 | 28 | 88 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MEDQARVDTR SRPSHGGEQP DQRTEPVRSR WTPKPEQILI LESIFNSGMV NPPKDETVRI 60 RKLLEKFGSV GDANVFYWFQ NRRSRSRRRQ RQIQASLSSG DKPQAPPGGG GCTGGGIEYA 120 NIVATGGFAP NPGANYPVMN ASSGCLVGSS SSCGFGGNGG NNSDDLFPFS GQTTGLSVQE 180 YEQTPIFCSP DASSLHYQPD VITVFINGVA TEVGRGPVDM RAMCGGDFVL FHASGVPVEV 240 NEYGFLMQSL QHGESYFLVP RHS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011079125.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079125.1 | 0.0 | WUSCHEL-related homeobox 11-like | ||||
Swissprot | Q6X7J3 | 3e-60 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A2G9H0K4 | 1e-115 | A0A2G9H0K4_9LAMI; Uncharacterized protein | ||||
STRING | EOY10442 | 2e-80 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6166 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 1e-32 | WUSCHEL related homeobox 12 |
Publications ? help Back to Top | |||
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