PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011079068.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family E2F/DP
Protein Properties Length: 358aa    MW: 38858.9 Da    PI: 8.6302
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011079068.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.21.2e-27109191271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  XP_011079068.1 109 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnslaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 191
                     689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094045.3E-1281358IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.106.3E-47104197IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.1E-36108191IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.2E-25110191IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.06E-21111192IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.21E-37196291IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440746.54E-36198297No hitNo description
SMARTSM011382.0E-65198356IPR014889Transcription factor DP, C-terminal
PfamPF087812.9E-35199328IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVNHSSNNNS NQADRDKNPS TISKSGGSGG GGGATRSWGT TVSGQSMSTS GSVGSPSSRS  60
EAAMAATASD STFLRLNNLD IHGDDAGSQG TAGNRKKKRG QRAVGGDKSG RGLRQFSMKV  120
CEKVESKGRT TYNEVADELV AEFADPNNSL ASPDQQQYDE KNIRRRVYDA LNVLMAMDII  180
SKDKKEIQWK GLPRTSVNDI EELKTERLGL QSRIEKKAAY LEELEEQYVG LQNLIKRNEQ  240
LYGSGNAPSG GVALPFILVQ TRPHATVEVE ISEDMQLVHF DFNSTPFELH DXKAMKFCEK  300
PQIDGVANNP AKNAGESSSM ANVYQPQIPH PSRSSISGRP PTSPPLPGIL KARVKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B9e-41102196193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011079068.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079068.10.0LOW QUALITY PROTEIN: transcription factor-like protein DPB
SwissprotQ9FNY21e-161DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2G9FZK60.0A0A2G9FZK6_9LAMI; E2F-like protein
STRINGXP_010241817.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-136Transcription factor DP