PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078839.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family G2-like
Protein Properties Length: 409aa    MW: 45563.7 Da    PI: 4.8128
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078839.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.91.7e-31234288155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWt++LH+rFve v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR 
  XP_011078839.1 234 KTRIRWTQDLHDRFVESVNRLGGPDKATPKAILKLMETDGLTILHVKSHLQKYRN 288
                     68****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.78231291IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-28232288IPR009057Homeodomain-like
SuperFamilySSF466891.0E-16232289IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-25234288IPR006447Myb domain, plants
PfamPF002495.7E-8238287IPR001005SANT/Myb domain
PfamPF143793.1E-17318364IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MKGMQDSDGF GCNYALEFPD CFPQSYAAQQ GSVPMGLFDQ SAAREGGLQR QNFWPSNPSS  60
PMISRIASPA PAFYATEVYM GLSQFDFQGN NTTCCSQEFR NHNLSVPPYQ QNPTGFYGDL  120
SPETEPDTHL SSVMETQTSS GSEYIRPEGF YGNLFCNIES DQILHLKKRL LGDLDDENMG  180
SPSIPLDANQ DLGVSQSLYT SHLTNAQQLG TPPGCLPTTS SNNSGSPGAV PSSKTRIRWT  240
QDLHDRFVES VNRLGGPDKA TPKAILKLME TDGLTILHVK SHLQKYRNVK SGPESVEGRS  300
EKKTSTNNVA QMDIETGMQL KEALQMQLDV QRHLREQLEI QRNLQMRIEE QAKQLKEMFD  360
QQQRRIRNLK ESADSKSTCP NNFSSTVEDP EVLVSEGSDD DMLFPIKIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-20234290258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-20234290258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-20234290157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-20234290157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-20234290157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-20234290157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-20234290258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-20234290258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-20234290258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-20234290258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-20234290258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-20234290258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078839.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078839.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X2
TrEMBLA0A2G9H6R61e-157A0A2G9H6R6_9LAMI; Uncharacterized protein
STRINGMigut.J01825.1.p1e-104(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.14e-63G2-like family protein