PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011078838.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 411aa MW: 45721.9 Da PI: 4.8128 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.9 | 1.7e-31 | 234 | 288 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH+rFve v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR XP_011078838.1 234 KTRIRWTQDLHDRFVESVNRLGGPDKATPKAILKLMETDGLTILHVKSHLQKYRN 288 68****************************************************5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.78 | 231 | 291 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-28 | 232 | 288 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.0E-16 | 232 | 289 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-25 | 234 | 288 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.7E-8 | 238 | 287 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.1E-17 | 320 | 366 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 411 aa Download sequence Send to blast |
MKGMQDSDGF GCNYALEFPD CFPQSYAAQQ GSVPMGLFDQ SAAREGGLQR QNFWPSNPSS 60 PMISRIASPA PAFYATEVYM GLSQFDFQGN NTTCCSQEFR NHNLSVPPYQ QNPTGFYGDL 120 SPETEPDTHL SSVMETQTSS GSEYIRPEGF YGNLFCNIES DQILHLKKRL LGDLDDENMG 180 SPSIPLDANQ DLGVSQSLYT SHLTNAQQLG TPPGCLPTTS SNNSGSPGAV PSSKTRIRWT 240 QDLHDRFVES VNRLGGPDKA TPKAILKLME TDGLTILHVK SHLQKYRNVK SGPESVEGTG 300 RSEKKTSTNN VAQMDIETGM QLKEALQMQL DVQRHLREQL EIQRNLQMRI EEQAKQLKEM 360 FDQQQRRIRN LKESADSKST CPNNFSSTVE DPEVLVSEGS DDDMLFPIKI N |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-20 | 234 | 290 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-20 | 234 | 290 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-20 | 234 | 290 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-20 | 234 | 290 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-20 | 234 | 290 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-20 | 234 | 290 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-20 | 234 | 290 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-20 | 234 | 290 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-20 | 234 | 290 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-20 | 234 | 290 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-20 | 234 | 290 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-20 | 234 | 290 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011078838.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078838.1 | 0.0 | protein PHR1-LIKE 1 isoform X1 | ||||
TrEMBL | A0A2G9H6R6 | 1e-155 | A0A2G9H6R6_9LAMI; Uncharacterized protein | ||||
STRING | Migut.J01825.1.p | 1e-104 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2491 | 24 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06800.1 | 4e-61 | G2-like family protein |