PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011078827.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 292aa MW: 30295.4 Da PI: 9.5551 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.4 | 1.9e-06 | 33 | 56 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H XP_011078827.1 33 KSKPCTKFFSTAGCPFGENCHFLH 56 7789******************** PP | |||||||
2 | zf-CCCH | 27.1 | 7.4e-09 | 98 | 123 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt++C+ + Ck+Gd+C+FaHg+ XP_011078827.1 98 KTKICNKYKTAEGCKFGDKCHFAHGE 123 89**********************96 PP | |||||||
3 | zf-CCCH | 36.7 | 7e-12 | 259 | 283 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f++ G C +GdrC+FaHg XP_011078827.1 259 FKTKLCENFSK-GSCTFGDRCHFAHG 283 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.77 | 31 | 58 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.84 | 31 | 59 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-6 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-7 | 33 | 56 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-4 | 33 | 56 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.638 | 96 | 124 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0011 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-8 | 96 | 127 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-14 | 97 | 127 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-6 | 98 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 9.94E-16 | 158 | 235 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.3E-12 | 164 | 234 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 9.7E-17 | 165 | 233 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.823 | 165 | 229 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 4.53E-15 | 167 | 229 | No hit | No description |
Pfam | PF00013 | 2.3E-12 | 167 | 231 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-16 | 254 | 289 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-8 | 258 | 288 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.474 | 258 | 285 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-7 | 258 | 284 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-9 | 259 | 283 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MDTRKRGRGE FANGGAKKSK SEIDSFSSGI GSKSKPCTKF FSTAGCPFGE NCHFLHYVPG 60 GYNAVAQMMN LAPAPAPTSR MLTGPLAVQN GSSAAAVKTK ICNKYKTAEG CKFGDKCHFA 120 HGEWELGKPI APSHEDPHSM GAIPNRFGGR PEAPIPGPAA SFGASATAKI SVDASLAGAV 180 IGKGGVNSKQ ICRQTGAKLA IRDHESDPNL RNIELEGSFE QIQQASAMVR ELIVSVGSAA 240 GPGKPMGATG GPPAPGSNFK TKLCENFSKG SCTFGDRCHF AHGAAELRKS GI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011078827.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078827.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-118 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A2I4HVP9 | 1e-161 | A0A2I4HVP9_JUGRE; zinc finger CCCH domain-containing protein 14-like | ||||
STRING | cassava4.1_013023m | 1e-165 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 3e-64 | C3H family protein |