PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011078756.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bZIP

Protein Properties

Length: 336aa MW: 36912.1 Da PI: 9.0495

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011078756.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49	1.4e-15	111	166	3	58
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 + kr rr+ +NRe+ArrsR+RK+a + eLe+ +L+ eN++L k+l ++ ++ + XP_011078756.1 111 DAKRMRRMLSNRESARRSRRRKQAHLTELETQGTQLKVENSSLLKRLTDITHKYNE 166 68********************************************9999888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-16	109	173	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.013	111	166	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-13	112	165	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.5E-12	113	165	No hit	No description
SuperFamily	SSF57959	2.39E-11	113	164	No hit	No description
PROSITE pattern	PS00036	0	116	131	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	1.8E-36	180	301	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MMMLGASDND EAICNNCASN HKAQESAATV SPASNPSQLN SHINHKASGQ DSSKLQEIDA 60 GEPVSLSPLP AVFKKSAAQV KSVTSGSSVE QSDDDEAEGE NEATQNMDAT DAKRMRRMLS 120 NRESARRSRR RKQAHLTELE TQGTQLKVEN SSLLKRLTDI THKYNEAAVD NRVLKADVET 180 LRAKVKMAEE TVKRVTGLNP LFQAMSEIST IAMASFVNSP DTSADVAMPV QDDLKQYYHH 240 TPSNSHTSVG NHTIQNGIMD IAPGENVQSN ATTAVGSNEK GRTVSMPRVA SLEHLQKRIR 300 VSSENKDIHV YRRPKKEKRR HQDTSILLSG KRTQVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	132	RRSRRRKQ
2	127	132	SRRRKQ
3	313	319	PKKEKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011078756.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020549671.1	0.0	light-inducible protein CPRF2-like
Swissprot	Q99090	8e-88	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A172W5J7	1e-133	A0A172W5J7_AVIMR; Putative light inducible protein CPRF2
STRING	XP_009787496.1	1e-113	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.1	7e-49	bZIP family protein

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]