PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011078663.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | Dof | ||||||||
Protein Properties | Length: 302aa MW: 31986 Da PI: 6.6167 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.6 | 6.6e-39 | 36 | 95 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ XP_011078663.1 36 HQALKCPRCDSVNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSK 95 6899****************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-28 | 36 | 93 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.7E-33 | 37 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.646 | 39 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 41 | 77 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MQDIHAIGGG GGGGGGGGRF FGGGDRRLRP HSHPSHQALK CPRCDSVNTK FCYYNNYNLS 60 QPRHFCKSCR RYWTKGGVLR NVPVGGGCRK TKRSKQKSSV APSGEAQRER SSNAQSSSSE 120 SSSLTAATTA ATPTSAMAEE GSAPSNTTSN SAVAYSFPDA RFFNASPNFD HQPIVNQPRD 180 GQIFTTEIGS FTTLMTSSSE MMGFGMGDIP TTSYSQAQEE NPKPVSENPG PGLLGTAAVE 240 ELKMQEMTGG LNNAAATLDW GSCGGGGGGE DEGLFDLTAA IDPAYWSQHQ WTDNDQSLNY 300 LP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 23 | GGRFFGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011078663.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028132 | 1e-32 | AB028132.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-8. | |||
GenBank | AK061000 | 1e-32 | AK061000.1 Oryza sativa Japonica Group cDNA clone:006-203-F09, full insert sequence. | |||
GenBank | AK100892 | 1e-32 | AK100892.1 Oryza sativa Japonica Group cDNA clone:J023130J11, full insert sequence. | |||
GenBank | AK101321 | 1e-32 | AK101321.1 Oryza sativa Japonica Group cDNA clone:J033034E07, full insert sequence. | |||
GenBank | AP005284 | 1e-32 | AP005284.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1121A12. | |||
GenBank | AP014958 | 1e-32 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 1e-32 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. | |||
GenBank | GQ183532 | 1e-32 | GQ183532.1 Oryza sativa Japonica Group Dof-type zinc finger protein 05 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078663.1 | 0.0 | dof zinc finger protein DOF5.4 | ||||
TrEMBL | A0A2G9GLZ7 | 1e-119 | A0A2G9GLZ7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.K01260.1.p | 8e-96 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 2e-49 | OBF binding protein 4 |