PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078598.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARR-B
Protein Properties Length: 682aa    MW: 74949.8 Da    PI: 5.6344
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078598.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.66.7e-29200253155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  XP_011078598.1 200 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILDLMNVDGLTRENVASHLQKYRL 253
                     79*******************.********************************8 PP
2Response_reg81.33.1e-27191271109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ll ++l+k +y +v+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++++++ + +  G
  XP_011078598.1  19 VLAVDDDPICLKLLDTLLRKCQY-HVTTTSQARMALKMLRENKerFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDPKLVMKGVTHG 111
                     799********************.***************888778*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l+Kp+ +eel++
  XP_011078598.1 112 ACDYLVKPVRIEELRN 127
                     **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.6E-1631679IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.4E-4216148No hitNo description
SuperFamilySSF521727.97E-3616152IPR011006CheY-like superfamily
SMARTSM004481.6E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.54218133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.60E-2820133No hitNo description
Gene3DG3DSA:1.10.10.604.3E-30197258IPR009057Homeodomain-like
PROSITE profilePS5129412.831197256IPR017930Myb domain
SuperFamilySSF466891.16E-19197257IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-24200253IPR006447Myb domain, plants
PfamPF002494.9E-6202252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MTVEEIRGDS ENFPVGMRVL AVDDDPICLK LLDTLLRKCQ YHVTTTSQAR MALKMLRENK  60
ERFDLVISDV HMPDMDGFKL LELVGLEMDL PVIMLSANSD PKLVMKGVTH GACDYLVKPV  120
RIEELRNIWQ HVIRRKKFDG KNQNKSGDQV KTHQASREVH GSPLTGDTDQ NGRFNRKRKD  180
EEDESEDNGN ESEDPGTQKK PRVVWSIELH RKFVAAVNQL GIEKAVPKRI LDLMNVDGLT  240
RENVASHLQK YRLYLKRISS VASQQANMAA ALGVKDSPFM RMGSLDGLGD FRTLSGARLA  300
NVGLSPFTTG GMLGRLNSPA NVNLRNLTPS ALIQPSQTQN LNSSITSLGK MHSALSPASP  360
NASLFQGIPS SLELDQLQPS QGALGSANVN SIDDSRMFSA AIGSSSNLMN SSTNSPMMLN  420
VQQVLGGGGF GNQSTHNMAS FNAESFNAGV SSSSNLLDPG KCNENWQNAL ESSKMQPNPL  480
LSTEVFHSQL PLNGSRDNSS SNGSYFQNNA IEFSSAMALP PFEDSRDMQC QESFMGDIQN  540
MNQVPSQRWE EQSGNYAHSS NNVFGSLNSH IPGNGIVSPL GRSLDQNSGI LNQKMDMFIN  600
GRSTGSASNL LQQNENEKSA TEPRTRSHDD FPFEHPKLQG GYVPQSYDSL DELMNAMIKR  660
EQDETIPNCD FGFDDYSFGS GI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-26198259364ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078598.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078598.10.0two-component response regulator ARR12
TrEMBLA0A2G9GDC80.0A0A2G9GDC8_9LAMI; Two-component response regulator
STRINGXP_009757804.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-127response regulator 12