PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011078446.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 602aa MW: 68809 Da PI: 7.9177 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 7 | 54 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEd++l+++v+ +G g+W+++a++ g+ R++k+c++rw +yl XP_011078446.1 7 KGFWKPEEDLILKKYVESHGEGNWTAVAKRSGLVRSAKSCRLRWKNYL 54 688*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48 | 2.9e-15 | 60 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l XP_011078446.1 60 RGMMSEDERDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 105 6789******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.239 | 1 | 58 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 3 | 57 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.03E-28 | 5 | 101 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-15 | 6 | 56 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 8 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-11 | 10 | 54 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-22 | 58 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-14 | 59 | 107 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.106 | 59 | 109 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.5E-14 | 60 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.21E-10 | 63 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MEAKLKKGFW KPEEDLILKK YVESHGEGNW TAVAKRSGLV RSAKSCRLRW KNYLRPNIKR 60 GMMSEDERDL IIRLHKLLGN RWSLIAGRLP GRTDNEVKNY WNTHLNKRAS RDQIKHLDSK 120 TEEKREENLE TTMALSTNEV ERDAVTDTSW IDNLTNVDYS MDMPPLLPDY SPLFNDYDTF 180 MPILDNFVLL ETLGSRADEI IQETIFMSEK TKKSRSCYIS TMYMEFTSDM FPAFSRNFIC 240 YVPDFVVEYD RTVETGVSPR DSRSHWEALV SLKGKCLSPA GKKAWFWDPH CFNLALLAKQ 300 AWRATEPGSL LARVLKARYP GSDFTDFEDE MRVVLNCPFS RECWALLNVP WGVVSAQVDL 360 KRVWCWSLFD KLREGEFGFC LVLGWAIWEQ RNKRLFEGVT QSPMDVVFFT MTYLDGFLSV 420 RSSQKSAVSQ RLLQVQWMLP QPGYLLANVA AVLFPGSGGA GIGVVLRDCQ GECNRPQLAF 480 FSFIVDIELA SRFGCMDQNG GLAWQRVALV ARQNKRMYIT CCYHAVSQDS FGQYPACRGE 540 SLSVGPTASK IGYGMCIACL GMRNKRIFEG LNMDDPEVIP MAQRCCGNTF PWSLEAPRRG 600 EG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 5 | 108 | 5 | 107 | B-MYB |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011078446.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 5e-57 | myb domain protein 82 |