PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078446.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 602aa    MW: 68809 Da    PI: 7.9177
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-16754148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W +eEd++l+++v+ +G g+W+++a++ g+ R++k+c++rw +yl
   XP_011078446.1  7 KGFWKPEEDLILKKYVESHGEGNWTAVAKRSGLVRSAKSCRLRWKNYL 54
                     688*****************************99************97 PP

2Myb_DNA-binding482.9e-1560105148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_011078446.1  60 RGMMSEDERDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 105
                      6789******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.239158IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-21357IPR009057Homeodomain-like
SuperFamilySSF466897.03E-285101IPR009057Homeodomain-like
SMARTSM007171.6E-15656IPR001005SANT/Myb domain
PfamPF002491.1E-14854IPR001005SANT/Myb domain
CDDcd001671.49E-111054No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2258108IPR009057Homeodomain-like
SMARTSM007171.9E-1459107IPR001005SANT/Myb domain
PROSITE profilePS5129420.10659109IPR017930Myb domain
PfamPF002498.5E-1460105IPR001005SANT/Myb domain
CDDcd001671.21E-1063105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MEAKLKKGFW KPEEDLILKK YVESHGEGNW TAVAKRSGLV RSAKSCRLRW KNYLRPNIKR  60
GMMSEDERDL IIRLHKLLGN RWSLIAGRLP GRTDNEVKNY WNTHLNKRAS RDQIKHLDSK  120
TEEKREENLE TTMALSTNEV ERDAVTDTSW IDNLTNVDYS MDMPPLLPDY SPLFNDYDTF  180
MPILDNFVLL ETLGSRADEI IQETIFMSEK TKKSRSCYIS TMYMEFTSDM FPAFSRNFIC  240
YVPDFVVEYD RTVETGVSPR DSRSHWEALV SLKGKCLSPA GKKAWFWDPH CFNLALLAKQ  300
AWRATEPGSL LARVLKARYP GSDFTDFEDE MRVVLNCPFS RECWALLNVP WGVVSAQVDL  360
KRVWCWSLFD KLREGEFGFC LVLGWAIWEQ RNKRLFEGVT QSPMDVVFFT MTYLDGFLSV  420
RSSQKSAVSQ RLLQVQWMLP QPGYLLANVA AVLFPGSGGA GIGVVLRDCQ GECNRPQLAF  480
FSFIVDIELA SRFGCMDQNG GLAWQRVALV ARQNKRMYIT CCYHAVSQDS FGQYPACRGE  540
SLSVGPTASK IGYGMCIACL GMRNKRIFEG LNMDDPEVIP MAQRCCGNTF PWSLEAPRRG  600
EG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2351085107B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078446.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.15e-57myb domain protein 82