PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078441.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family CPP
Protein Properties Length: 601aa    MW: 65068.1 Da    PI: 8.4836
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078441.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.81.2e-14134173242
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C+N+ e+
  XP_011078441.1 134 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCHNNVEN 173
                     89**************************.********9875 PP
2TCR51.22.5e-16218257140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  XP_011078441.1 218 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNYE 257
                     589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.1E-17133173IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.038134258IPR005172CRC domain
PfamPF036381.2E-11135170IPR005172CRC domain
SMARTSM011146.2E-20218259IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-12221256IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MDQKEGGDFP PKKQPPPQSG ASSTAPVDFP ARKLVRQLDF TGFSGAASAS NVEQPLLAKP  60
SPPVPHQPHL VKPGQLPRPA HLQPPQMMFM TMQQPPPSAA PSAHPSVRPL VKPESPRARP  120
RQNVNEVKDG TPKKQKQCNC KHSRCLKLYC ECFASGIYCD GCNCVNCHNN VENEAARREA  180
VEATLERNPN AFRPKIASSP HAARDSREEA GEVLVSGKHN KGCHCKKSGC LKKYCECFQA  240
NILCSENCKC MDCKNYEGSE ERQALFHGDH ANNMMYIQQA ANAAITGAIG SSGYGSPPLN  300
KKRKGQELFF ASAVKDPGHK PGQLQQANQI NASVPSASLS SIPGARPGNT SVLSPSKFTY  360
RSLLADIIQP QDLKELCSVL VVYSAEAAKM LAEERNAVEK QAEDSRETSL VSSTQHLSQS  420
QQHFAAEKIR PDDKPSLENQ TEKANPDESG SDGADVSKGR PMSPSTLALM CDEADTIFST  480
TASIGSVVHS NVSSQLPDEQ GLTEAYVEQE RIVLTKFRDC LNRLITLGEI KETRYSSLAR  540
MQSGNKNDLT SRSSSNVKTG SRNQQPVNNG VARSAAPPRR TSPEITLAHG AVNNGPNVNK  600
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-301262672132Protein lin-54 homolog
5fd3_B1e-301262672132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078441.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754512e-82HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078441.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2G9GSN40.0A0A2G9GSN4_9LAMI; Metallothionein-like protein
STRINGMigut.K00502.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-171Tesmin/TSO1-like CXC domain-containing protein