PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011078395.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

HSF

Protein Properties

Length: 348aa MW: 38939.6 Da PI: 5.1327

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011078395.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.2	3.1e-34	17	109	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F++k+y++++d++++ li w ++ nsf+vl++ +f++++Lp yFkh+nf+SFvRQLn+YgFkkv+ ++ weF++++F +g+++ll++ XP_011078395.1 17 FVMKTYQMVSDPTTNGLIAWGREHNSFIVLEPLDFSHRILPVYFKHNNFSSFVRQLNTYGFKKVDPDR---------WEFANEWFLRGQTQLLHN 102 9**************************************************************999.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i r+k++ XP_011078395.1 103 IVRRKNT 109 **986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.3E-46	13	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.54E-32	14	106	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	4.4E-35	15	106	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	8.6E-29	17	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.8E-17	17	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.8E-17	55	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	56	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.8E-17	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MHGMEGNNGD SSIIAPFVMK TYQMVSDPTT NGLIAWGREH NSFIVLEPLD FSHRILPVYF 60 KHNNFSSFVR QLNTYGFKKV DPDRWEFANE WFLRGQTQLL HNIVRRKNTS RAYTSLMKHE 120 DDEEEELLVE IAKLKQEQKS LEQELESMNR RLESTERRPQ QMMTFLYKVV QDPQILPRMM 180 LEKEKMRRLT SDNIEKKRRI MISAASSSSS SGMAMSSSSA KSEDDQDCNT IGETTPSSSP 240 EGNLDADTYY QSSPSLELSS SPEMFSHRQG IGMPVMRQDF QNYATLSSSS MLSPSGENSG 300 FAAALPPVDS IAGYNSGGGG SANYFEGLMA GENASPPPPY PFSLLGGG

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MHGMEGNNGD SSIIAPFVMK TYQMVSDPTT NGLIAWGREH NSFIVLEPLD FSHRILPVYF  60
KHNNFSSFVR QLNTYGFKKV DPDRWEFANE WFLRGQTQLL HNIVRRKNTS RAYTSLMKHE  120
DDEEEELLVE IAKLKQEQKS LEQELESMNR RLESTERRPQ QMMTFLYKVV QDPQILPRMM  180
LEKEKMRRLT SDNIEKKRRI MISAASSSSS SGMAMSSSSA KSEDDQDCNT IGETTPSSSP  240
EGNLDADTYY QSSPSLELSS SPEMFSHRQG IGMPVMRQDF QNYATLSSSS MLSPSGENSG  300
FAAALPPVDS IAGYNSGGGG SANYFEGLMA GENASPPPPY PFSLLGGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-23	6	106	19	129	Heat shock factor protein 1
5d5v_B	2e-23	6	106	19	129	Heat shock factor protein 1
5d5v_D	2e-23	6	106	19	129	Heat shock factor protein 1
5hdg_A	2e-23	14	106	7	110	Heat shock factor protein 1
5hdn_A	2e-23	14	106	7	110	Heat shock factor protein 1
5hdn_B	2e-23	14	106	7	110	Heat shock factor protein 1
5hdn_C	2e-23	14	106	7	110	Heat shock factor protein 1
5hdn_D	2e-23	14	106	7	110	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011078395.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078395.1	0.0	heat stress transcription factor C-1-like
Swissprot	Q9LV52	3e-85	HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBL	A0A4D9A8E9	1e-149	A0A4D9A8E9_SALSN; Heat shock transcription factor, other eukaryote
STRING	Migut.E00326.1.p	1e-123	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6832	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	4e-73	heat shock transcription factor C1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guan Q,Yue X,Zeng H,Zhu J The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771]