PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011078318.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 250aa MW: 27844.5 Da PI: 7.0744 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.2 | 2.9e-08 | 141 | 188 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + k + a +L ++Y++sLq XP_011078318.1 141 SHSLAERLRREKINEKLRCLQDLVPGC----YKTMGMAVMLDVIINYVRSLQ 188 8*************************8....355888888999999988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.01E-11 | 135 | 191 | No hit | No description |
SuperFamily | SSF47459 | 2.36E-16 | 135 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.256 | 137 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-15 | 137 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-5 | 141 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-7 | 143 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:2000488 | Biological Process | positive regulation of brassinosteroid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MELFTNFASM EGFNSTVHGI MPLCSEGFSD HHHHHHNQLP MAFSDEIPRS IGPHIPIFDP 60 VAHFFSSAGH GCSTMNMMQE PEFHVNSSPS VSGTGVPGKG SKKHQGQNYG GKKRKRVGER 120 ETEKLRDVVH VRAKRGQATD SHSLAERLRR EKINEKLRCL QDLVPGCYKT MGMAVMLDVI 180 INYVRSLQNQ IDFLSMKLSA ASLFYDFNSS EAEAMETIQG SSGYEAAQGM EKLVEEGYGG 240 LSHFQTSWPL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011078318.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ035878 | 9e-46 | KJ035878.1 Sesamum indicum clone TilSSR_7079 microsatellite sesame_7079 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078318.2 | 0.0 | transcription factor bHLH75 | ||||
Swissprot | A4D998 | 1e-54 | BH075_ARATH; Transcription factor bHLH75 | ||||
TrEMBL | A0A2G9I8K1 | 1e-113 | A0A2G9I8K1_9LAMI; Uncharacterized protein | ||||
STRING | Migut.L01053.1.p | 1e-115 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9069 | 17 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25330.1 | 8e-57 | bHLH family protein |
Publications ? help Back to Top | |||
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