PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078266.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 268aa    MW: 29572.7 Da    PI: 4.9552
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078266.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.4e-1871120255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  XP_011078266.1  71 VYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALAIKG 120
                     59****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-3171129IPR001471AP2/ERF domain
SMARTSM003803.4E-3671134IPR001471AP2/ERF domain
PfamPF008471.9E-1271120IPR001471AP2/ERF domain
PROSITE profilePS5103222.97271128IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-2171128IPR016177DNA-binding domain
PRINTSPR003674.9E-107283IPR001471AP2/ERF domain
CDDcd000189.83E-3372129No hitNo description
PRINTSPR003674.9E-1094110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAEPPYSETE SSGPSFSSFS FGPDQIGSNP KPQPKRSREN ESGSGSEKVD GKKRSRNVTD  60
SNNSSCSKHL VYRGVRMRAW GKWVSEIREP RKKSRIWLGT FATPEMAARA HDVAALAIKG  120
SSAILNFPEI SHLLPRPVTC SPRDVQAAAT KAALMDDVLD HRRDSPSLTS SSSSSSSSLV  180
SSIASPEPAE ELGEIVELPS LDTSYESLEP SRDGDFALAQ DYSWEEYYSH PGLYSLEDCC  240
FSFQEQESIV LEDLMSTNFE ALLWKHHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-18671281072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00467DAPTransfer from AT4G32800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078266.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078266.10.0ethylene-responsive transcription factor TINY
SwissprotQ9M0805e-51ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A2G9GV671e-100A0A2G9GV67_9LAMI; Uncharacterized protein
STRINGMigut.K00522.1.p6e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.14e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]