PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011078235.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB_related | ||||||||
Protein Properties | Length: 126aa MW: 14353.9 Da PI: 5.0373 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.8 | 5.8e-09 | 14 | 58 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ +Ed++l +a ++ g +W++Ia+ ++ g+++ ++++++ XP_011078235.1 14 VWSRQEDKILEQALVEFLVGidhRWRRIAEFLP-GKSPDEVRLHYE 58 5****************9999************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.4E-8 | 11 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.79E-11 | 14 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.3E-8 | 14 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-8 | 15 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-8 | 15 | 61 | No hit | No description |
PROSITE profile | PS50090 | 7.944 | 15 | 61 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MVNLEQSVDS ATAVWSRQED KILEQALVEF LVGIDHRWRR IAEFLPGKSP DEVRLHYEAL 60 LHDIVEIDSG RVELPGYSDE SAPLGWDEHA RLRAPGQISF GGGNRSRHSE VERKKGTPWT 120 EDEHRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011078235.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020550455.1 | 9e-87 | transcription factor SRM1-like | ||||
TrEMBL | A0A2G9IA53 | 1e-56 | A0A2G9IA53_9LAMI; Uncharacterized protein | ||||
STRING | Migut.F01593.1.p | 6e-42 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 6e-29 | MYB family protein |