PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078220.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 282aa    MW: 31132.7 Da    PI: 5.6041
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+++v+++G+g +W + +++ g++R++k+c++rw++yl
   XP_011078220.1 14 RGPWSPEEDNTLKNYVEKHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding452.5e-1469111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd +++ + +  G++ W+ Ia+ ++ gRt++++k++w++
   XP_011078220.1  69 GGFTEEEDNIILSLYHNIGSR-WSVIASQLP-GRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.555962IPR017930Myb domain
SuperFamilySSF466891.4E-2812109IPR009057Homeodomain-like
SMARTSM007171.2E-121364IPR001005SANT/Myb domain
PfamPF002491.4E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-251569IPR009057Homeodomain-like
CDDcd001674.69E-101662No hitNo description
PROSITE profilePS5129421.66863117IPR017930Myb domain
SMARTSM007175.3E-1367115IPR001005SANT/Myb domain
PfamPF002492.5E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2470117IPR009057Homeodomain-like
CDDcd001671.62E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRTPCCDKT QVKRGPWSPE EDNTLKNYVE KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEEEDNIIL SLYHNIGSRW SVIASQLPGR TDNDVKNYWN TKLKKKLLAA  120
GKTSPSTATA AAATNYDVAP PSSFPVDITT PENMSPYFPI LETNSHQHML GAAQIPLPEL  180
MEIPENIENA YTSGLFPAAN PLPQEPVSSL SPSFSLDNNA SGSSSWTTSS EDDKFLAEFG  240
SGLLHCDVLN SFDYQEKLSD DQINHPSFAY YSSSYYSASS LE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078220.10.0transcription factor RAX2
TrEMBLA0A0E3JNZ41e-93A0A0E3JNZ4_9LAMI; MYB11
STRINGAquca_001_00195.17e-81(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-69myb domain protein 36