PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011078200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GATA | ||||||||
Protein Properties | Length: 231aa MW: 25946.9 Da PI: 9.013 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.4 | 2.3e-19 | 185 | 218 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+ttkTplWR+gp g+k+LCnaCG+++rk + XP_011078200.1 185 CADCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 218 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.703 | 179 | 215 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.8E-20 | 179 | 230 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.14E-12 | 180 | 219 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.0E-16 | 183 | 218 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.97E-13 | 184 | 226 | No hit | No description |
Pfam | PF00320 | 4.8E-17 | 185 | 218 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 185 | 210 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MNLNSSPIEQ ISDDHHHHHQ QQPHQPFAPN PSPSVSCHIF FNSATQDHTG YSYDRRQFYH 60 PQHHLDDNYG ANYHGGSTCE IKNKVEGGLK LTLWKKEDEE YNESIVADKS TTNPVKWMSS 120 KMRLMHKMKN PTTTTTTDRV ALKISSSATA PTKLEDQKLQ PSSSLETDLS SNSFPSNNNS 180 PIRVCADCNT TKTPLWRSGP KGPKSLCNAC GIRQRKARRA MAAPLPISHQ Q |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011078200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ058873 | 8e-46 | KJ058873.1 Sesamum indicum clone TilSSR_30074 microsatellite Sesame_30074 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078200.2 | 1e-169 | LOW QUALITY PROTEIN: putative GATA transcription factor 22 | ||||
TrEMBL | A0A2G9HH17 | 6e-59 | A0A2G9HH17_9LAMI; Uncharacterized protein | ||||
STRING | XP_009604300.1 | 4e-40 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3097 | 22 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 2e-23 | cytokinin-responsive gata factor 1 |