PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011077930.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bZIP

Protein Properties

Length: 892aa MW: 95381.3 Da PI: 8.6279

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011077930.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.8	1.1e-13	327	379	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r+rr++kNRe+A rsR+RK+a++ eLe + +L++eN Lk l el+ + + XP_011077930.1 327 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKHALAELERKRK 379 69*******************************************99997765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.6E-14	323	387	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.611	325	377	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.75E-11	327	376	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.8E-14	327	380	No hit	No description
CDD	cd14707	2.76E-25	327	381	No hit	No description
Pfam	PF00170	6.9E-12	327	379	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	330	345	IPR004827	Basic-leucine zipper domain
TIGRFAMs	TIGR00065	5.4E-124	523	847	IPR000158	Cell division protein FtsZ
Hamap	MF_00909	36.566	529	873	IPR000158	Cell division protein FtsZ
SuperFamily	SSF52490	5.1E-66	532	730	IPR003008	Tubulin/FtsZ, GTPase domain
Gene3D	G3DSA:3.40.50.1440	9.8E-90	532	736	IPR003008	Tubulin/FtsZ, GTPase domain
SMART	SM00864	5.4E-104	533	727	IPR003008	Tubulin/FtsZ, GTPase domain
Pfam	PF00091	5.9E-38	533	694	IPR003008	Tubulin/FtsZ, GTPase domain
CDD	cd02201	2.61E-143	544	836	No hit	No description
PROSITE pattern	PS01135	0	619	640	IPR020805	Cell division protein FtsZ, conserved site
PRINTS	PR00423	3.8E-49	620	640	IPR003008	Tubulin/FtsZ, GTPase domain
PRINTS	PR00423	3.8E-49	648	669	IPR003008	Tubulin/FtsZ, GTPase domain
PRINTS	PR00423	3.8E-49	711	733	IPR003008	Tubulin/FtsZ, GTPase domain
SuperFamily	SSF55307	4.81E-39	726	839	IPR008280	Tubulin/FtsZ, C-terminal
SMART	SM00865	7.6E-46	729	846	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain
PRINTS	PR00423	3.8E-49	734	755	IPR003008	Tubulin/FtsZ, GTPase domain
Gene3D	G3DSA:3.30.1330.20	4.6E-43	737	840	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain
Pfam	PF12327	1.1E-29	744	838	IPR024757	Cell division protein FtsZ, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0003924	Molecular Function	GTPase activity
GO:0005525	Molecular Function	GTP binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 892 aa Download sequence Send to blast
MVATDSDIVS QGDAEPPVQS SQQHTKNLIL QSLGRQSSIY SLTLDEFQHT LCESGKNFGS 60 MNMDEFLNSI WTAEENQAHA TSATATSNNA NAVHFPVQET NTKTDKGIAK QPSLPRQGSL 120 SIPEPLCRKT VDEVWSEIHK KQQHNNDTQG QIQNPNNTQR QPTFGEMTLE DFLIRAGVVR 180 EQNFAPAPPQ QPQFGMFQNS SHPVMGPSFV ARPVMAIGGG VNNVTAQPMP QSAVGEALGY 240 TGGMKRASGY SQPTPTVNYG GRLGNGNGGG FGQVQGLGMG SPVSPVSSDG LGTNHVDSGN 300 QYGLDMGGAR GGRKRIIDGP VXKVVERRQR RMIKNRESAA RSRARKQAYT VELEAELNQL 360 KEENAHLKHA LAELERKRKQ QYYEEARAKA QMQSKAQKAN ETVQAMRRTL SCLYMATCTS 420 QYFTPLDIRS PLGVLTVHGA RVSPLKMVEE RNGFPAAGKK GGSSFPQFKC SANSHSVNQF 480 QSKDPFLNLH PEIALLGGET NSTMINPRQD SSSGSVTESP RDSSTLNNYN EAKIKVIGVG 540 GGGSNAVNRM IESAMKGVEF WIVNTDIQAM KMSPVFPKHR LQIGQELTRG LGAGGNPDVG 600 MNAAKESKEA IEGAVYGADM VFVTAGMGGG TGTGGAPIIA AVAKSMGILT VGIVTTPFSF 660 EGQRRTVQAL EGIAALRENV DTLIVIPNEK LLKAVSSSTP VTEAFNLADD ILRQGVRGIS 720 DIITIPGLVN VDFADVRAIM ANAGSSLMGI GTATGKTRAT DAALNAIQSP LLDIGIERAT 780 GIVWNITGGS DLTLFEVNAA AEVIYDLVDP SANLIFGAVV DPSISGQVSI TLIATGFKRQ 840 GESDGRTLQA NQLPQGDSNI GLNRRPASFL EGGSVEIPEF LRKKGRSRYP RV

Sequence ? help Back to Top

Protein Sequence Length: 892 aa Download sequence Send to blast

MVATDSDIVS QGDAEPPVQS SQQHTKNLIL QSLGRQSSIY SLTLDEFQHT LCESGKNFGS  60
MNMDEFLNSI WTAEENQAHA TSATATSNNA NAVHFPVQET NTKTDKGIAK QPSLPRQGSL  120
SIPEPLCRKT VDEVWSEIHK KQQHNNDTQG QIQNPNNTQR QPTFGEMTLE DFLIRAGVVR  180
EQNFAPAPPQ QPQFGMFQNS SHPVMGPSFV ARPVMAIGGG VNNVTAQPMP QSAVGEALGY  240
TGGMKRASGY SQPTPTVNYG GRLGNGNGGG FGQVQGLGMG SPVSPVSSDG LGTNHVDSGN  300
QYGLDMGGAR GGRKRIIDGP VXKVVERRQR RMIKNRESAA RSRARKQAYT VELEAELNQL  360
KEENAHLKHA LAELERKRKQ QYYEEARAKA QMQSKAQKAN ETVQAMRRTL SCLYMATCTS  420
QYFTPLDIRS PLGVLTVHGA RVSPLKMVEE RNGFPAAGKK GGSSFPQFKC SANSHSVNQF  480
QSKDPFLNLH PEIALLGGET NSTMINPRQD SSSGSVTESP RDSSTLNNYN EAKIKVIGVG  540
GGGSNAVNRM IESAMKGVEF WIVNTDIQAM KMSPVFPKHR LQIGQELTRG LGAGGNPDVG  600
MNAAKESKEA IEGAVYGADM VFVTAGMGGG TGTGGAPIIA AVAKSMGILT VGIVTTPFSF  660
EGQRRTVQAL EGIAALRENV DTLIVIPNEK LLKAVSSSTP VTEAFNLADD ILRQGVRGIS  720
DIITIPGLVN VDFADVRAIM ANAGSSLMGI GTATGKTRAT DAALNAIQSP LLDIGIERAT  780
GIVWNITGGS DLTLFEVNAA AEVIYDLVDP SANLIFGAVV DPSISGQVSI TLIATGFKRQ  840
GESDGRTLQA NQLPQGDSNI GLNRRPASFL EGGSVEIPEF LRKKGRSRYP RV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2vam_A	1e-100	549	840	29	318	CELL DIVISION PROTEIN FTSZ
2vxy_A	1e-100	549	840	29	318	CELL DIVISION PROTEIN FTSZ
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	880	886	LRKKGRS

Functional Description ? help Back to Top
Source	Description
UniProt	Exhibits GTPase activity (By similarity). Component of the plastid division machinery that forms a contractile ring at the division site. {ECO:0000250, ECO:0000269\|PubMed:18284374, ECO:0000269\|PubMed:19995726}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011077930.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015580584.1	0.0	uncharacterized protein LOC8267156 isoform X3
Swissprot	Q9LXJ0	0.0	FTZ22_ARATH; Cell division protein FtsZ homolog 2-2, chloroplastic
TrEMBL	A0A103XPN6	0.0	A0A103XPN6_CYNCS; Basic-leucine zipper domain-containing protein
STRING	Migut.L01775.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6155	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36270.1	6e-99	bZIP family protein

Publications ? help Back to Top
Fujiwara M,Yoshida S Chloroplast targeting of chloroplast division FtsZ2 proteins in Arabidopsis. Biochem. Biophys. Res. Commun., 2001. 287(2): p. 462-7 [PMID:11554751] McAndrew RS,Froehlich JE,Vitha S,Stokes KD,Osteryoung KW Colocalization of plastid division proteins in the chloroplast stromal compartment establishes a new functional relationship between FtsZ1 and FtsZ2 in higher plants. Plant Physiol., 2001. 127(4): p. 1656-66 [PMID:11743110] Reumann S,Ma C,Lemke S,Babujee L AraPerox. A database of putative Arabidopsis proteins from plant peroxisomes. Plant Physiol., 2004. 136(1): p. 2587-608 [PMID:15333753] Maple J,Aldridge C,Møller SG Plastid division is mediated by combinatorial assembly of plastid division proteins. Plant J., 2005. 43(6): p. 811-23 [PMID:16146521] McAndrew RS, et al. In vivo quantitative relationship between plastid division proteins FtsZ1 and FtsZ2 and identification of ARC6 and ARC3 in a native FtsZ complex. Biochem. J., 2008. 412(2): p. 367-78 [PMID:18284374] Schmitz AJ,Glynn JM,Olson BJ,Stokes KD,Osteryoung KW Arabidopsis FtsZ2-1 and FtsZ2-2 are functionally redundant, but FtsZ-based plastid division is not essential for chloroplast partitioning or plant growth and development. Mol Plant, 2009. 2(6): p. 1211-22 [PMID:19995726] Olson BJ,Wang Q,Osteryoung KW GTP-dependent heteropolymer formation and bundling of chloroplast FtsZ1 and FtsZ2. J. Biol. Chem., 2010. 285(27): p. 20634-43 [PMID:20421292] Karamoko M,El-Kafafi el-S,Mandaron P,Lerbs-Mache S,Falconet D Multiple FtsZ2 isoforms involved in chloroplast division and biogenesis are developmentally associated with thylakoid membranes in Arabidopsis. FEBS Lett., 2011. 585(8): p. 1203-8 [PMID:21439281] Gargano D,Maple-Grødem J,Møller SG In vivo phosphorylation of FtsZ2 in Arabidopsis thaliana. Biochem. J., 2012. 446(3): p. 517-21 [PMID:22823492] Gargano D,Maple-Grødem J,Reisinger V,Eichacker LA,Møller SG Analysis of the chloroplast proteome in arc mutants and identification of novel protein components associated with FtsZ2. Plant Mol. Biol., 2013. 81(3): p. 235-44 [PMID:23225155] Zhang M,Schmitz AJ,Kadirjan-Kalbach DK,Terbush AD,Osteryoung KW Chloroplast division protein ARC3 regulates chloroplast FtsZ-ring assembly and positioning in arabidopsis through interaction with FtsZ2. Plant Cell, 2013. 25(5): p. 1787-802 [PMID:23715471] Liu Z,Li Y,Cao H,Ren D Comparative phospho-proteomics analysis of salt-responsive phosphoproteins regulated by the MKK9-MPK6 cascade in Arabidopsis. Plant Sci., 2015. 241: p. 138-50 [PMID:26706066] Dutta S, et al. Variations in chloroplast movement and chlorophyll fluorescence among chloroplast division mutants under light stress. J. Exp. Bot., 2017. 68(13): p. 3541-3555 [PMID:28645163]