PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077907.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 466aa    MW: 51753.2 Da    PI: 6.3177
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077907.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS297.92.6e-91444442373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalkl..fsevsP 89 
                     ++lLl+cA a+++++ +laq++++ l++ as  gdp+qRla+yf++AL +r +r +++ ++  +++  +        + + +++++l  ++++ P
  XP_011077907.1  44 EKLLLHCASALETNNVTLAQQVMWVLNNVASFVGDPNQRLASYFLRALVSRASRVCPTPVNFNTATGGAA-GggpafHRTLMSVTELagYVDLIP 137
                     689***************************************************7777776555444443.247775555555556699****** PP

            GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl 181
                     +++f++ + N +Il+a++g  r+Hi+Df+i++++QWp+L++aLa+ pegpp+lRi +++   ++    + ++ee+g+rL++fA+  +vpfefn++
  XP_011077907.1 138 WHRFGFCASNGTILKAIQGFPRIHILDFSITHCMQWPTLIDALAKGPEGPPMLRISVLSWRPKVpplLNASIEEIGHRLTNFAKYRDVPFEFNIV 232
                     ***********************************************************9777789999************************** PP

            GRAS 182 .............vak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadh.nsesFle 255
                                  + +  l +l+ ++L++k +Eal+Vn++  l +l+de+++++       +rd++L++vk+lsP++v+vv++++d+   + +  
  XP_011077907.1 233 evgipqesssdilHYDlLLRQLNSSQLNLKVDEALVVNCQNWLRYLPDEPTCSSTssnlisCRDSFLDMVKNLSPRIVTVVDEDCDLgAMTGLES 327
                     999998887777633346778899999********************887765544566669*************************6667899* PP

            GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
                     r++++++y++  fd+le+ lp++s +ri +E+  +g +i+n++  eg +r+er e++ k ++r+++ GF +vp+ e++ k++k+ll +++ ++g+
  XP_011077907.1 328 RITSCFNYMWIPFDALETFLPKNSPQRIEYEAD-IGHKIENIIGFEGIQRIERLESFTKLSQRMGNKGFLSVPFCEETIKEVKTLLDEHAsGWGM 421
                     *********************************.********************************************************55555 PP

            GRAS 350 rveeesgslvlgWkdrpLvsvSaW 373
                     + ++e+++l+l+Wk+++ v ++aW
  XP_011077907.1 422 K-KDEDNTLILTWKGHNSVYATAW 444
                     4.35578999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576134No hitNo description
PROSITE profilePS5098544.91417425IPR005202Transcription factor GRAS
PfamPF035148.9E-8944444IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MKAELRGNSQ SIPLQDPNHL ATTQSSTSGA LTGCLSTLDG ACIEKLLLHC ASALETNNVT  60
LAQQVMWVLN NVASFVGDPN QRLASYFLRA LVSRASRVCP TPVNFNTATG GAAGGGPAFH  120
RTLMSVTELA GYVDLIPWHR FGFCASNGTI LKAIQGFPRI HILDFSITHC MQWPTLIDAL  180
AKGPEGPPML RISVLSWRPK VPPLLNASIE EIGHRLTNFA KYRDVPFEFN IVEVGIPQES  240
SSDILHYDLL LRQLNSSQLN LKVDEALVVN CQNWLRYLPD EPTCSSTSSN LISCRDSFLD  300
MVKNLSPRIV TVVDEDCDLG AMTGLESRIT SCFNYMWIPF DALETFLPKN SPQRIEYEAD  360
IGHKIENIIG FEGIQRIERL ESFTKLSQRM GNKGFLSVPF CEETIKEVKT LLDEHASGWG  420
MKKDEDNTLI LTWKGHNSVY ATAWVPHTVG KILSHELTTS DCLRRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-584444634420Protein SHORT-ROOT
5b3h_E1e-584444634420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077907.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077907.10.0scarecrow-like protein 32
TrEMBLA0A2G9FYW20.0A0A2G9FYW2_9LAMI; Uncharacterized protein
STRINGGorai.013G072100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-116GRAS family protein