PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077906.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 250aa    MW: 28355.1 Da    PI: 4.6754
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077906.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.4e-145497755
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      Er+RR+++N+++  Lr+++P+      +K++Ka+i + A+eYIksLq
  XP_011077906.1 54 VSERNRRKKLNQRLYALRSVVPNI-----TKMDKASIIRDAIEYIKSLQ 97
                    57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.8764796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-1450101No hitNo description
SuperFamilySSF474592.88E-1851115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-1653102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1753112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-125497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MENIDYEYAN YWETNMFLQT EEFDGFFDEA LSAYYDSSSP DGANSASLAS KNIVSERNRR  60
KKLNQRLYAL RSVVPNITKM DKASIIRDAI EYIKSLQNEE RRIHDEISEL ESGMSLSPNS  120
GKLEIDEEGH TVFLSKPKRT RMDHSCDSAA STLFIMPSPV EVLELRVSKM GEKTLVVSLE  180
CSKRRDTMIK LCEAFESLKL KIITCSINAL PGRLLKTVFL EGDEEEQDTL RVKIEAAIAA  240
LNDPDSPMSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-135297954Transcription factor MYC2
5gnj_B3e-135297954Transcription factor MYC2
5gnj_E3e-135297954Transcription factor MYC2
5gnj_F3e-135297954Transcription factor MYC2
5gnj_G3e-135297954Transcription factor MYC2
5gnj_I3e-135297954Transcription factor MYC2
5gnj_M3e-135297954Transcription factor MYC2
5gnj_N3e-135297954Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077906.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574553e-33KP257455.1 Salvia miltiorrhiza clone 22 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077906.10.0transcription factor bHLH35
SwissprotQ2HIV94e-81BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2G9HHL71e-127A0A2G9HHL7_9LAMI; Uncharacterized protein
STRINGVIT_11s0052g00100.t011e-108(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.16e-84bHLH family protein