PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011077904.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 204aa MW: 23443.9 Da PI: 6.9362 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.8 | 1.2e-12 | 10 | 47 | 2 | 39 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 +i n s+r+ f +R n +lKKA+ELS LC++++ vii XP_011077904.1 10 QIANASKRNAIFGRRANSLLKKANELSLLCGVDIGVII 47 799**********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-7 | 1 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.699 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.61E-15 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 6.2E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-17 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-12 | 11 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MAKRRIKHEQ IANASKRNAI FGRRANSLLK KANELSLLCG VDIGVIIHKQ GAENDSILWP 60 SPDAFEQRLY KFLDFSNFER AKKMVLHEQY LEKMISMESE YFLKSMKRTE FKESQQLLSE 120 VQQGKHLCQL DLYQLNCLNS TIDEMLKNLQ KKDNELNNEQ QQQQAQLFSL PPPPLLLPSP 180 GMAAAMQQEI GGNDQLFTGP MSEE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011077904.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077904.1 | 1e-149 | agamous-like MADS-box protein AGL80 | ||||
STRING | Migut.B01089.1.p | 1e-43 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65330.1 | 2e-15 | M-type_MADS family protein |