PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011077884.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 536aa MW: 57606.2 Da PI: 6.664

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011077884.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.6e-09	353	401	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_011077884.1 353 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 401 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.94E-17	348	419	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.03E-11	348	405	No hit	No description
PROSITE profile	PS50888	15.485	350	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-16	351	417	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-6	353	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-10	356	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MDMAGKDSNI EPRKGNDELV NYHGPNMTSD WQVNGNHLTN STIEMISMGS SIGESSARPS 60 AHFCPPAWDQ PINGRSLGYS DVNVRNDAST SSSHGPVRAD MGWTSNSMLR GGMFLPTVPG 120 LLPQNLPHFP ADLAFIERAA RFSCFSGGNF GGVMNPFGAP GPINPYSRGL GPMQGPDEIF 180 GGNGLRPLPG MQSQGHETDV TEVSKEASLP GRKPGNEGSP SKNEKKSESL LHSHDEAKHG 240 VGVSGNESDE AEFSGRGGQE ELNGPAVESS GKGLGSKRRK RVGQDTEHDE NNEAPRPSID 300 MAKGMAETKE KGDRNPTSIS KPGGKHGKQS SQGSDPPKEE YIHVRARRGQ ATNSHSLAER 360 VRREKISERM KFLQDLVPGC SKVTGKAVML DEIINYVQSL QRQVEFLSMK LATVNPRLDF 420 NIEGFLAKDI LQSRAGMSSS LAFPPDMTLP FAPLHPSQPG LIQAGLLSNS SETLRRPISL 480 QSPAISGGFK EPTSQGPNVW EDELHNVVHM GFNSSAPLNT QDLSGSLPPG HMKAEP

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MDMAGKDSNI EPRKGNDELV NYHGPNMTSD WQVNGNHLTN STIEMISMGS SIGESSARPS  60
AHFCPPAWDQ PINGRSLGYS DVNVRNDAST SSSHGPVRAD MGWTSNSMLR GGMFLPTVPG  120
LLPQNLPHFP ADLAFIERAA RFSCFSGGNF GGVMNPFGAP GPINPYSRGL GPMQGPDEIF  180
GGNGLRPLPG MQSQGHETDV TEVSKEASLP GRKPGNEGSP SKNEKKSESL LHSHDEAKHG  240
VGVSGNESDE AEFSGRGGQE ELNGPAVESS GKGLGSKRRK RVGQDTEHDE NNEAPRPSID  300
MAKGMAETKE KGDRNPTSIS KPGGKHGKQS SQGSDPPKEE YIHVRARRGQ ATNSHSLAER  360
VRREKISERM KFLQDLVPGC SKVTGKAVML DEIINYVQSL QRQVEFLSMK LATVNPRLDF  420
NIEGFLAKDI LQSRAGMSSS LAFPPDMTLP FAPLHPSQPG LIQAGLLSNS SETLRRPISL  480
QSPAISGGFK EPTSQGPNVW EDELHNVVHM GFNSSAPLNT QDLSGSLPPG HMKAEP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011077884.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077884.1	0.0	transcription factor bHLH49
TrEMBL	A0A2G9I0E5	0.0	A0A2G9I0E5_9LAMI; Uncharacterized protein
STRING	XP_006484279.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2871	21	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-104	bHLH family protein