PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077862.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family G2-like
Protein Properties Length: 413aa    MW: 45829.4 Da    PI: 7.0302
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.38.2e-3446100155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kprl+Wtp+LHerFveav+qLGG+ekAtPk++l+lm+++gLtl+h+kSHLQkYRl
  XP_011077862.1  46 KPRLKWTPDLHERFVEAVNQLGGAEKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 100
                     79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.78843103IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-3144101IPR009057Homeodomain-like
SuperFamilySSF466891.02E-1645101IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-2446101IPR006447Myb domain, plants
PfamPF002493.2E-104899IPR001005SANT/Myb domain
PfamPF143791.2E-22141188IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MYHHQSHQGK NIHSSARMSI PSERHLFLQG ANGTGDSGLV LSTDAKPRLK WTPDLHERFV  60
EAVNQLGGAE KATPKSVLKL MGIQGLTLYH LKSHLQKYRL SKNLHGQANS GSNKLSTADR  120
VPEMNGTHMS NPTIASQTKN MHLGEAIQMQ IEVQRRLHEQ LEVQRHLQLQ IEAQGKYLQA  180
VLEKAQETLG RQNLGTMGLE AAKVQLSDLV SKVSTQCLNS AFSGIKELSD LCLQKTQTSQ  240
PTDLSTDSCL TSCDGSMRDQ DQYNPIGVKP INFKAPTEPR VNYNETSLGK SELRWPDDLK  300
EGENFLSTAN DSVENAFLTE SNFNSLSMSI GLQSSEWNGN RNYPEKGFKG AEAAVNFFNQ  360
STDSNNISNP EKQKIPPELK LPLLSTKLDL NTDDQNNVAS HCKQLDLNGF CWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-2345102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-2345102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-2345102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-2345102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-2345102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-2345102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-2345102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-2345102158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077862.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077862.10.0myb-related protein 2 isoform X1
SwissprotQ9SQQ91e-128PHL9_ARATH; Myb-related protein 2
TrEMBLA0A2Z7B2B10.0A0A2Z7B2B1_9LAMI; Transcription factor
STRINGXP_009758035.11e-178(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29462451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-127G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]