PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077642.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 758aa    MW: 86996.9 Da    PI: 6.8545
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077642.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.77.2e-1163857561374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+a++++d ++a++lL+++++++sp gd  qRla+yf+ +L+arla+++s++ k l +++t+   +++ l+a+ ++    P+ k+s+
  XP_011077642.1 385 LRTLLINCAQAIAADDRRNANELLKQIKQHSSPFGDGSQRLAHYFAHGLEARLAGTGSQMHKDLFSQRTT---MTDYLKAYYTYLASAPFRKISN 476
                     6789**********************************************************99999888...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++ N++I+   +++ rvHiiDf+i +G+QWp+++q La+R++gpp+lRiTg++ p++g   +e++eetg+rLa++A++++vpfe+n+ +a+++e+
  XP_011077642.1 477 FASNKTIMMRSQKSMRVHIIDFGILYGFQWPTFIQRLAEREGGPPKLRITGIDFPQPGfrPAERIEETGRRLAHYARTFNVPFEYNA-IAQKWET 570
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ e+L+++++E+++Vn+ ++ ++l+de++  es r+ +L+l+++++P+++++   +  ++++ F++rf e l ++salfd+le+++pr++ er 
  XP_011077642.1 571 IRAEDLKIEKDEVVVVNCLYRSKNLVDETMLAESSRTMILNLIRKINPDIFIHGIVNGAYGAPFFVTRFREVLFHFSALFDMLETNIPRDKPERL 665
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +Er ++gre++nv+aceg er+er et+++W+ r  +aGF ++p++  ++++a+  ++ ++ + y ++e+s++l++gWk+r ++++S+W+
  XP_011077642.1 666 LIERDIFGREAMNVIACEGWERVERPETYKQWQVRNLRAGFIQIPFDRWIMDTARKKVKAFYHKDYIIDEDSQWLLMGWKGRIIYALSCWK 756
                     **************************************************************888*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.58359736IPR005202Transcription factor GRAS
PfamPF035142.5E-113385756IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MDPHIHGFFN SSNRIQLGNQ STAEFSNWDG PGFEITYPDQ KQVHRHRNQS SSFQQPSNGG  60
VHLLSNQPFS NGNVSSSFVD IEDYYRDDCD FSDAVLRYID QMLMEEDMED KLHMLQESLD  120
FQAKERSFYE VLGKKYPPSP HPESALFSPC RESADDYFIY VDRHNSRTNS GDGSGYLIDV  180
VDPNWINSRT DYDPSLVPCH TTYNLSNACI SSSSSLNGFS DSPISPLQIH ETWCESQPVW  240
NFRKGVEEAS RFLPSGSELL VNLGVDGLLR QDPKEGESKV EKDEVRRSPS ESRGKKNCHC  300
ADTDLEEERI SKLPAVSADS DVPIEEFDAV LLNSLGEGRR KFGAYREELQ NAASKNMQQN  360
GQTKGSGGGK GRDKKRNRKK QVIDLRTLLI NCAQAIAADD RRNANELLKQ IKQHSSPFGD  420
GSQRLAHYFA HGLEARLAGT GSQMHKDLFS QRTTMTDYLK AYYTYLASAP FRKISNFASN  480
KTIMMRSQKS MRVHIIDFGI LYGFQWPTFI QRLAEREGGP PKLRITGIDF PQPGFRPAER  540
IEETGRRLAH YARTFNVPFE YNAIAQKWET IRAEDLKIEK DEVVVVNCLY RSKNLVDETM  600
LAESSRTMIL NLIRKINPDI FIHGIVNGAY GAPFFVTRFR EVLFHFSALF DMLETNIPRD  660
KPERLLIERD IFGREAMNVI ACEGWERVER PETYKQWQVR NLRAGFIQIP FDRWIMDTAR  720
KKVKAFYHKD YIIDEDSQWL LMGWKGRIIY ALSCWKPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5039175725380Protein SCARECROW
5b3h_A3e-5039175724379Protein SCARECROW
5b3h_D3e-5039175724379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077642.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077642.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A2G9GCN10.0A0A2G9GCN1_9LAMI; Uncharacterized protein
STRINGMigut.L01952.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein