PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077580.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 306aa    MW: 34612.6 Da    PI: 7.2874
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077580.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285e-092670345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+eE +++ +a +++ ++   +W+ +a++++ g+t  +++  + 
   XP_011077580.1 26 KWTAEENKRFENALALFDKDtpdRWHNVAAMIP-GKTVSDVIKQYK 70
                     8********************************.******998886 PP
2Myb_DNA-binding46.11.1e-14134178347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_011077580.1 134 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 178
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.4552277IPR017884SANT domain
SMARTSM007174.6E-102375IPR001005SANT/Myb domain
CDDcd001673.67E-82673No hitNo description
PfamPF002492.2E-72671IPR001005SANT/Myb domain
SuperFamilySSF466891.0E-112680IPR009057Homeodomain-like
PROSITE profilePS5129421.106127183IPR017930Myb domain
SuperFamilySSF466892.24E-17129182IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-18130182IPR006447Myb domain, plants
SMARTSM007173.5E-13131181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-12131178IPR009057Homeodomain-like
PfamPF002494.1E-12134178IPR001005SANT/Myb domain
CDDcd001672.14E-11134179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MMNREMGLDS PASSSNWLFG EDKVTKWTAE ENKRFENALA LFDKDTPDRW HNVAAMIPGK  60
TVSDVIKQYK ELVEDVSDIE AGLIPIPGYG NTPFTLELAS DPDYQGGFKQ LYSPGGKRNT  120
STRCPDHERK KGVPWTEEEH RQFLLGLKKY GKGDWRNISR NFVTTRTPTQ VASHAQKYFI  180
RQLSGGKDKR RSSIHDITTV NLNETASPSQ DKGGPRAEDK SHLVVERQQN SDVNDMVQGM  240
YNSYQTDPGA MMGFSPPNSS LMFTHLQGTT PFGLYLHEHH MRSNDPHGVL LEHHGSNFQI  300
HSTRHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1827921176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077580.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H75e-95DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2G9I5K71e-156A0A2G9I5K7_9LAMI; Zuotin
STRINGXP_006429310.11e-123(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-106MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]