PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011077548.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

G2-like

Protein Properties

Length: 262aa MW: 29948.1 Da PI: 7.9052

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011077548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.6	1.4e-28	11	65	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl+Wt+eLH+ F +av+q+GG+++AtPk il++m ++gLt+ hvkSHLQkYR+ XP_011077548.1 11 KERLKWTKELHDLFEKAVNQIGGPDRATPKGILKAMAIPGLTIFHVKSHLQKYRM 65 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-27	9	66	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.93E-17	10	65	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-22	11	65	IPR006447	Myb domain, plants
Pfam	PF00249	7.7E-8	13	64	IPR001005	SANT/Myb domain
Pfam	PF14379	3.8E-18	98	142	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MGSNRSNGSS KERLKWTKEL HDLFEKAVNQ IGGPDRATPK GILKAMAIPG LTIFHVKSHL 60 QKYRMSVFTR EEDHIRGKFE RRSALEMLPN FSATSGAQLN EALLIQMEAQ RRLNDQLEVQ 120 KSLKMKIEAQ GRFLDKIMEE YKNRAPSTKL VKPYSPILSL PSLSEESDQS NGKEFESDSE 180 EVDTNEMISR DEFRAQKRIK IQDNVLPQTQ KHPSFAPDMP NLTMFSLDAM HNNLYAEQEM 240 GFPWSIGAFP SPLQPAIYYP TN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	11	68	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	11	68	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-19	11	68	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	11	68	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	11	68	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	11	68	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	11	68	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	11	68	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	11	68	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	11	68	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	11	68	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	11	68	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011077548.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077547.1	0.0	myb family transcription factor PHL7
Refseq	XP_011077550.1	0.0	myb family transcription factor PHL7
Refseq	XP_020549678.1	0.0	myb family transcription factor PHL7
TrEMBL	A0A022QJI3	1e-139	A0A022QJI3_ERYGU; Uncharacterized protein
STRING	Migut.L02017.1.p	1e-140	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-48	G2-like family protein