PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077483.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 332aa    MW: 36790.1 Da    PI: 6.9672
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077483.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++++G+g +W + ++++g++R++k+c++rw++yl
   XP_011077483.1 14 KGPWSPEEDAKLKEYIEKHGTGgNWIALPHKIGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding36.51.2e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ +Ed ++  +++  G++ W+ Ia  ++ gRt++++k++w++
   XP_011077483.1  69 GEFSDDEDRIICSLFASIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.904966IPR017930Myb domain
SuperFamilySSF466894.9E-2711109IPR009057Homeodomain-like
SMARTSM007171.1E-131364IPR001005SANT/Myb domain
PfamPF002492.6E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-251569IPR009057Homeodomain-like
CDDcd001676.84E-111662No hitNo description
PROSITE profilePS5129416.66667117IPR017930Myb domain
SMARTSM007177.9E-1167115IPR001005SANT/Myb domain
PfamPF002493.6E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KHGTGGNWIA LPHKIGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC SLFASIGSRW SIIAGQLPGR TDNDIKNYWN TKLKKKLMMS  120
MPPPLSSNHK SPHQPTIYPS PPHNSLLHNS SIITSPVRAN CSRGFQPILS PTFTTLISSN  180
SGAHDGFFVG PLHGDYDQII NRDSKSSNLL IFGGEASCSS SDGSCTTNHQ ITTHGRSKDQ  240
VLDHDYMFPS GDQNLCFSNG VDEDDQKFLT TTSIDHGYSS SAAAAAAGNE CFGGNPLDYS  300
IEEIKQLIST NNMCSNNLNF FMDEIQTEED RR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077483.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9908351e-101KC990835.1 Scutellaria baicalensis MYB2 (myb) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077483.10.0transcription factor RAX2 isoform X1
TrEMBLA0A2G9FXT51e-120A0A2G9FXT5_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.L01708.1.p1e-100(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-72myb domain protein 36