PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077474.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 533aa    MW: 59015.7 Da    PI: 7.3408
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077474.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-1659105148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd+ l++av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
   XP_011077474.1  59 KGGWTPEEDDTLKKAVAAFRGKCWKKIAEFFP-DRSEVQCLHRWQKVL 105
                      688*****************************.************986 PP
2Myb_DNA-binding61.41.9e-19111157148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEde++ ++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
   XP_011077474.1 111 KGPWTQEEDEKITELVAKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157
                      79******************************.*************97 PP
3Myb_DNA-binding52.21.5e-16163206146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE++ l++a++ +G++ W+  a+ ++ gRt++ +k++w++
   XP_011077474.1 163 KDAWTLEEELTLLNAHRVHGNK-WAELAKLLP-GRTDNAIKNHWNS 206
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.68654105IPR017930Myb domain
SuperFamilySSF466893.52E-1455111IPR009057Homeodomain-like
SMARTSM007175.3E-1558107IPR001005SANT/Myb domain
PfamPF002492.1E-1559105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2161112IPR009057Homeodomain-like
CDDcd001671.03E-1262105No hitNo description
PROSITE profilePS5129430.983106161IPR017930Myb domain
SuperFamilySSF466894.87E-31108204IPR009057Homeodomain-like
SMARTSM007172.6E-18110159IPR001005SANT/Myb domain
PfamPF002492.2E-18111157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-28113160IPR009057Homeodomain-like
CDDcd001678.49E-16113157No hitNo description
Gene3DG3DSA:1.10.10.602.5E-22161212IPR009057Homeodomain-like
SMARTSM007173.5E-15162210IPR001005SANT/Myb domain
PROSITE profilePS5129421.052162212IPR017930Myb domain
PfamPF002499.9E-15163206IPR001005SANT/Myb domain
CDDcd001673.89E-11165208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MEEVKSDEFC PENKDSAAAS SSSVSENSSS IVLKSPGISS PTSTSSAHRR TTGPIRRAKG  60
GWTPEEDDTL KKAVAAFRGK CWKKIAEFFP DRSEVQCLHR WQKVLNPELV KGPWTQEEDE  120
KITELVAKYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPH IKKDAWTLEE ELTLLNAHRV  180
HGNKWAELAK LLPGRTDNAI KNHWNSSLKK KLDFYLATGN LPPVAKNAPI NGARDINRTP  240
SIGELLFGSN KGTNSTVLES SATTDSCKAE DGKDKPETMT EDHDIAANQQ SESTDPECNK  300
CEAMPSEAET VYSNIESKCE KRTTCGEVDQ YRVIGGSSHY DIPIYGTLYY EPPVLDNYGQ  360
LDSHLANISL VQSESDISPA TSPTPFFTPP SVKGGCLSAQ TPESILKNAA KSFPNTPSIL  420
RKRKSEALSK EAVKSNGHNH TNSFEDARLQ NNSLCADPWD NDDGISSNKS VNSSPPYRLR  480
FKRTSVLRSV EKQLDFSINV EQESGDSNAK SGDSELKEIP PVTKFVYTRH RRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-70582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-70582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077474.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077474.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_011077475.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_011077476.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549498.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549499.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549500.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549501.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549502.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549503.10.0transcription factor MYB3R-3-like isoform X2
SwissprotQ6R0321e-149MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A2G9GCM60.0A0A2G9GCM6_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.L01945.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-136myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]