PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011077365.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

S1Fa-like

Protein Properties

Length: 83aa MW: 9176.25 Da PI: 11.2194

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011077365.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	133.1	7.1e-42	17	83	4	70
S1FA 4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +ea+G+nPGlivll+vggl+l+flvgny+lyvyaqk+lPP+kkkPvskkk+kre+lkqGv++PGe XP_011077365.1 17 RGAEAQGFNPGLIVLLLVGGLILLFLVGNYVLYVYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE 83 5689**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	0.004	16	83	No hit	No description
Pfam	PF04689	4.8E-40	20	83	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MLSSIVCLRR LIKNVVRGAE AQGFNPGLIV LLLVGGLILL FLVGNYVLYV YAQKTLPPKK 60 KKPVSKKKMK RERLKQGVSA PGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011077365.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077365.1	2e-51	DNA-binding protein S1FA-like isoform X2
Swissprot	Q7XLX6	9e-15	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	W9SCA3	9e-26	W9SCA3_9ROSA; DNA-binding protein S1FA1
STRING	XP_010104121.1	1e-26	(Morus notabilis)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]