PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011077326.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB_related | ||||||||
Protein Properties | Length: 779aa MW: 86290.1 Da PI: 6.8092 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22 | 3.9e-07 | 50 | 92 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I +++ + q++++++ + XP_011077326.1 50 AWTRQEEESFFAALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 92 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-9 | 41 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.024 | 46 | 97 | IPR017884 | SANT domain |
SMART | SM00717 | 1.9E-4 | 47 | 95 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-5 | 49 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.30E-4 | 50 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 779 aa Download sequence Send to blast |
MVSQVSLDCE LCLGSENLGN KDGGSSVPSF SQEHAAPQMP VKKQTRQWAA WTRQEEESFF 60 AALRQVGKNF EKITCRVQSK NKDQVRHYYY RLVRRMNKLL GPELCLDAKN SKDTNAAMLR 120 WWSLLEKYSC KASKLHLKPR RFKIFVETLE NQLLKDRKKN IKKRLSTGEN NSSIPNIPAG 180 NQVRASGHDN RAVKMVLVDS QNIQKVGTGK GALFKRHINI GMSRTNCKVD PASMKTAKHR 240 RKTGLASTAA YKRWEKAAIA GVSLVADAAE HLERVDTDKE IDNVQETPGH DGSQLVGKVV 300 QSLHASSQSM FNENNIHNSA KLKLQLFPID ECTRKALEMD NHNPHLELTL STRKKLSSIL 360 EHLNRKWGNS SSLSKELMLF PYWAQRENLV GYQKWTKDSP LCAADVYYLI GSPPIFRLRY 420 GWFSKAEVES ATAQALSCAN IKEQNLNINI APEQNAEAEN PNSPLGDQLV SAEKLITLSP 480 SSTRTPITTV ECGVSVSKIN TSRFQDSTAG LSSLREESGD LAVTRQVENM KNIALSTGEW 540 ADSLTNISVG DLLSESTQST DVNCTEFPMP LGSNCFQQMP FSCDSFDAAI AAHIYKHQNK 600 VDLQQGLASH APSIWDGEET CDAFAFQKTG AFCNKEQDVS MNDTMDACKQ ATVPSPSASH 660 EELPEMEKVT SSDLACGDLM DDGMSDHPSE NSTKDFGGLT DIYWPDSLGP LDLDIPSCRY 720 HSNDLILSDS LSGLNRLIAN SVDAFQSCSF FGLDKKEPAS TAEARQTASF SDFKIGSEV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011077326.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077326.1 | 0.0 | TSL-kinase interacting protein 1 isoform X1 | ||||
Swissprot | Q8LJT8 | 0.0 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A2G9H0X9 | 0.0 | A0A2G9H0X9_9LAMI; Polycomb-group transcriptional regulator | ||||
STRING | Migut.L01697.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8640 | 17 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.2 | 0.0 | TSL-kinase interacting protein 1 |