PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077234.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family RAV
Protein Properties Length: 354aa    MW: 39357.3 Da    PI: 9.5751
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077234.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.39e-1456104155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+++++g
  XP_011077234.1  56 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDTAAQRFRG 104
                     689***9788.8*********3.....5*************************98 PP
2B3103.98.3e-33183282196
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k+ tpsdv+k++rlv+pk++ae+h    +g++ +++ l led+ g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++   +++
  XP_011077234.1 183 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqNGNNSKGVLLNLEDKGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDIVSFQRSTIPDKQ 277
                     89****************************778889***************************************************75447777 PP

                     .EEEE CS
              B3  92 lvvkv 96 
                     l++ +
  XP_011077234.1 278 LYIDW 282
                     77665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.33E-2556111No hitNo description
PfamPF008477.4E-956104IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-1756112IPR016177DNA-binding domain
PROSITE profilePS5103220.17857112IPR001471AP2/ERF domain
SMARTSM003809.1E-3057118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2057112IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.8E-42174288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-30181282IPR015300DNA-binding pseudobarrel domain
CDDcd100177.67E-31182271No hitNo description
SMARTSM010192.0E-26183286IPR003340B3 DNA binding domain
PfamPF023622.8E-29183282IPR003340B3 DNA binding domain
PROSITE profilePS5086315.002183286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDASSADEST TSDSLSTTPS PIKPPEISLC RMGSGTSVII DAENGVEAES RKLPSSRFKG  60
VVPQPNGRWG AQIYEKHQRV WLGTFNEEEE AARAYDTAAQ RFRGRDAVTN FKPLAEKEDE  120
IEAAFLSSHS KAEIVDMLRK HTYNDELEQS RRNYAGNKMA KDGLFSLSSG GGDRALKARE  180
QLFEKAVTPS DVGKLNRLVI PKQHAEKHFP LQNGNNSKGV LLNLEDKGGK VWRFRYSYWN  240
SSQSYVLTKG WSRFVKEKNL RAGDIVSFQR STIPDKQLYI DWKPRNNGSN AAAIGLSGLV  300
QPVQMVRLFG VNIFEAPRNG GDAAAIDSCS GKRLREMEIL GLECSKKQRV IDAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5618029711128DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077234.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077234.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9C6M51e-152RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A2G9I1N70.0A0A2G9I1N7_9LAMI; Uncharacterized protein
STRINGMigut.E00306.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-149RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]