PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077223.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 283aa    MW: 31999.7 Da    PI: 6.8818
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05118137120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+k+F+r  n++ H+
  XP_011077223.1 118 FSCSVCSKTFNRYNNMQMHM 137
                     89*****************9 PP
2zf-C2H2140.00015203225123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk+F  + + ++H +++
  XP_011077223.1 203 FGCRKCGKPFAVRGDWRTHEKNC 225
                     56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.99E-5112141No hitNo description
PROSITE profilePS5015710.803118145IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-5118137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.15118140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
SMARTSM00355170166198IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.67E-6184223No hitNo description
Gene3DG3DSA:3.30.160.608.3E-5189223IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140203223IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MQTHHSLPYI SSSESFYNLE ADEEDEIDCS TLLSLGPPGQ HHRQQKYHPS FAAYKQGQDH  60
LQNPSCENGV TVALHIGPPS ASPSLAIAEG NPSEIAGLVE GQYWIPTPAQ ILVGPTQFSC  120
SVCSKTFNRY NNMQMHMWGH GSEYRKGPES LRGTKPASSI LRLPCYCCAE GCKNNIDHPR  180
SKPLKDFRTL QTHYKRKHGS KPFGCRKCGK PFAVRGDWRT HEKNCGKLWF CICGSDFKHK  240
RSLKDHVRAF GQGHAPHSEN LYSYDHVDVE ELEEEEEQEE EEN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077223.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0494934e-39KJ049493.1 Sesamum indicum clone TilSSR_20694 microsatellite Sesame_20694 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077223.10.0zinc finger protein WIP6
SwissprotQ9FX681e-121ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2Z7B8E01e-146A0A2Z7B8E0_9LAMI; Uncharacterized protein
STRINGevm.model.supercontig_1.2151e-135(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-123C2H2-like zinc finger protein