PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011077208.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GRAS

Protein Properties

Length: 732aa MW: 83020.6 Da PI: 7.7439

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011077208.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	384.1	1.7e-117	358	729	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL+ cA+av+++d + a+++L++++++a+p+gd mqRla+yf+ +L ar+a+s++++y +l +ts +++l+a++++ ++P+ k+s+ XP_011077208.1 358 LRTLLTLCAQAVAADDRRTANEFLKQIRQHATPTGDGMQRLAHYFADGLVARMAGSGTQIYTSLINMPTS---AADVLKAYHIYLATCPFRKISN 449 5789**********************************************************999988...89**************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN++I++ ++ +r+HiiDf+i +G+QWp++lq L+sRp+gpp+lRiTg++ p +g +e++eetg+rLa++Ae+++vpfefn+ +a+++e+ XP_011077208.1 450 FFANKTIMNLSAKVTRLHIIDFGILYGFQWPCFLQRLSSRPGGPPKLRITGIDLPCPGfrPSERVEETGRRLARYAETFKVPFEFNA-IAQKWET 543 ***************************************************99999***********************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++le+L+++++E l+Vn+ ++ +llde+v ++s+r+ vL+l+++++P v+v+ + ++n++ F +rf eal +ys+lfd+lea +pre +er+ XP_011077208.1 544 ITLEDLKINTDELLVVNCLYRFRNLLDETVMVNSPRNIVLNLIRKMNPAVFVLGIVNGSYNAPFFITRFREALFHYSSLFDMLEAIIPREIHERM 638 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er ++gre++nv+ace aer+er et+++W++r ++a F+++pl+++++k a+ ++ + + + ++e+ +++++gWk+r ++++S+Wr XP_011077208.1 639 LLERIVFGREAMNVIACEAAERIERPETYKQWQARNMRARFEQLPLDKEIMKMARNRVESSYHKDFVIDEDGHWMLQGWKGRIVYALSSWR 729 **********************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.636	332	709	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.8E-115	358	729	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
MSRIKFNNKA VPVSPDPNMI EYLRVSDRFL DRNVVDNMPV SSQFSFDARG PSSEGEYPVD 60 FDFSDVVLKY INHILMEEEV EDKTCMFQES AALQAAEKSF YEVLGEQYPA STDYQLLPNL 120 DLNTESPDDK FSGELKSYCG SGDMGALCTD WHTDPYYDRI GGHHVTGNLV SQSVSLSSYS 180 SSSNDTIIDG PIDSPVSTLK VPHIFGGNES AMQFKKGVEE ARKFLPSGSK LIVDMKYDKS 240 VEKKQKEGRT SMVVKVEKNI NNDESSDLSR GKKNPYHESM GLQDERSSKQ SATYSESTVT 300 PEMFDKVLLC SGGRNESALR KELSEVSKLT PQIAYLKGSS GGKTRVKKQG GKRNVVDLRT 360 LLTLCAQAVA ADDRRTANEF LKQIRQHATP TGDGMQRLAH YFADGLVARM AGSGTQIYTS 420 LINMPTSAAD VLKAYHIYLA TCPFRKISNF FANKTIMNLS AKVTRLHIID FGILYGFQWP 480 CFLQRLSSRP GGPPKLRITG IDLPCPGFRP SERVEETGRR LARYAETFKV PFEFNAIAQK 540 WETITLEDLK INTDELLVVN CLYRFRNLLD ETVMVNSPRN IVLNLIRKMN PAVFVLGIVN 600 GSYNAPFFIT RFREALFHYS SLFDMLEAII PREIHERMLL ERIVFGREAM NVIACEAAER 660 IERPETYKQW QARNMRARFE QLPLDKEIMK MARNRVESSY HKDFVIDEDG HWMLQGWKGR 720 IVYALSSWRP AY

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

MSRIKFNNKA VPVSPDPNMI EYLRVSDRFL DRNVVDNMPV SSQFSFDARG PSSEGEYPVD  60
FDFSDVVLKY INHILMEEEV EDKTCMFQES AALQAAEKSF YEVLGEQYPA STDYQLLPNL  120
DLNTESPDDK FSGELKSYCG SGDMGALCTD WHTDPYYDRI GGHHVTGNLV SQSVSLSSYS  180
SSSNDTIIDG PIDSPVSTLK VPHIFGGNES AMQFKKGVEE ARKFLPSGSK LIVDMKYDKS  240
VEKKQKEGRT SMVVKVEKNI NNDESSDLSR GKKNPYHESM GLQDERSSKQ SATYSESTVT  300
PEMFDKVLLC SGGRNESALR KELSEVSKLT PQIAYLKGSS GGKTRVKKQG GKRNVVDLRT  360
LLTLCAQAVA ADDRRTANEF LKQIRQHATP TGDGMQRLAH YFADGLVARM AGSGTQIYTS  420
LINMPTSAAD VLKAYHIYLA TCPFRKISNF FANKTIMNLS AKVTRLHIID FGILYGFQWP  480
CFLQRLSSRP GGPPKLRITG IDLPCPGFRP SERVEETGRR LARYAETFKV PFEFNAIAQK  540
WETITLEDLK INTDELLVVN CLYRFRNLLD ETVMVNSPRN IVLNLIRKMN PAVFVLGIVN  600
GSYNAPFFIT RFREALFHYS SLFDMLEAII PREIHERMLL ERIVFGREAM NVIACEAAER  660
IERPETYKQW QARNMRARFE QLPLDKEIMK MARNRVESSY HKDFVIDEDG HWMLQGWKGR  720
IVYALSSWRP AY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-49	358	729	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011077208.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077208.1	0.0	scarecrow-like protein 14
Refseq	XP_020549007.1	0.0	scarecrow-like protein 14
Refseq	XP_020549008.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2G9G822	0.0	A0A2G9G822_9LAMI; Uncharacterized protein
STRING	Migut.F00778.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]