PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077145.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family AP2
Protein Properties Length: 697aa    MW: 76020.1 Da    PI: 6.7199
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077145.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.5e-15273332155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_011077145.1 273 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 332
                     57*******************666664478446*************************98 PP
2AP246.78e-15375426155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_011077145.1 375 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 426
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.33E-17273342IPR016177DNA-binding domain
CDDcd000182.40E-22273342No hitNo description
PfamPF008471.3E-11273332IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-15274341IPR001471AP2/ERF domain
PROSITE profilePS5103219.164274340IPR001471AP2/ERF domain
SMARTSM003802.0E-29274346IPR001471AP2/ERF domain
PRINTSPR003677.3E-6275286IPR001471AP2/ERF domain
CDDcd000181.03E-24375436No hitNo description
PfamPF008479.9E-10375426IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-17375435IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.4E-18376434IPR001471AP2/ERF domain
PROSITE profilePS5103219.177376434IPR001471AP2/ERF domain
SMARTSM003802.7E-33376440IPR001471AP2/ERF domain
PRINTSPR003677.3E-6416436IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MGSMNNNWLG FSLSPQEQLP QENSSSLPTL DQISAAAAAQ VVSSQSCFNH LTTATAPSHH  60
SGLPLPSLNL PPPFSLFQPF NTSNLNTTSQ DWTSIKDVSI NSFSCSSHSH SLENQETPKL  120
ENFLGVGGQT SFAHDHHHQH HKKLCLDHIA SNSDTNYDTS NFNIYQETEP TSHHTNTTTT  180
NSTIGLSMIK NWLRSNPGPP DNKGGADEAV APPPLAGPTS AGAQTLSLSM NTNGNAMESC  240
ASDSKLADSQ AAGGGAVESV PRKSIDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG  300
QTRKGRQVYL GGYDKEEKAA RAYDLAALKY WGTTTTTNFP ISNYEKELEE MKHMTRQEYV  360
ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA  420
AIKFRGLNAV TNFEINRYDV KSILESSTLP IGGAAKRLKD AENAETALEM HRANEGNLSL  480
HLTDGHINNY GSGGNNHSWP TIAFQQSQPL NMYPYAHQRL WCKQEQDHDF SHGLNDIHHQ  540
LQLGNTQNFL QPSVLHNLMS LDSSSMEHSS GSNSVVYGNN NGDGSGNGSY GNGANGSGFM  600
VPMMGTVIVQ DGSQNQGNGF LGNEGEKAVG YEGNFGSSDA YQQARNLYYQ SQQSSSDGIG  660
STCNNWIPTA VPTQLAARNS NLAVCHGASN FTVWNDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077145.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077145.10.0AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN21e-148BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2G9I0A40.0A0A2G9I0A4_9LAMI; Uncharacterized protein
STRINGEOY097220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-134AP2 family protein