PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011077052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | G2-like | ||||||||
Protein Properties | Length: 462aa MW: 51062.3 Da PI: 5.0713 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.1 | 1e-33 | 247 | 301 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe Fv+av++LGGsekAtPk +l+lm+v+gLt++hvkSHLQkYR+ XP_011077052.1 247 KARMRWTPELHEVFVDAVNKLGGSEKATPKGVLKLMNVEGLTIYHVKSHLQKYRT 301 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.3E-18 | 244 | 301 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.601 | 244 | 304 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-31 | 245 | 302 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-25 | 247 | 301 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.1E-10 | 249 | 300 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.6E-22 | 332 | 379 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MPPAAFKKKY SETQSSEMEA SGAMSRSLSI LPSPVKEKFP QLPDSPQVTL AQELTSNIVP 60 SFRSPCSSNQ KMVGNLFSSA PGCPSGLGCS SLSPNTNRWM SSPFYSISPR DGVSFPSTQL 120 SVSIVENNDV PWNVDAIENF LDMPLNIPVQ NGPIETSTGI MSSEDRAKKT DWQDWTDQLI 180 RVNDDALDSN WSDLLVDVDV PDPDPKLLDL PPDVSTCQPQ IHQAHPHPVP SGESCPVIDS 240 PTATSTKARM RWTPELHEVF VDAVNKLGGS EKATPKGVLK LMNVEGLTIY HVKSHLQKYR 300 TARFKPESSE GTSEKKSNTG SEMTSLDLET TMGITEALRL QMEVQKQLHE QLEIQRNLQL 360 RIEEQGKHLQ MIFEQQKKME EEKLRALSNS DKHSEPSEDN HASIKDVASD VCIPVDEHPS 420 KKETSSEAKP CKERAPDDRG CSPPMKRAKA YETVTSGASH ES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-31 | 247 | 305 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-31 | 247 | 305 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-31 | 247 | 305 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-31 | 247 | 305 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-31 | 247 | 305 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-31 | 247 | 305 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-31 | 247 | 305 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-31 | 247 | 305 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011077052.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077052.1 | 0.0 | protein PHR1-LIKE 1-like isoform X1 | ||||
Refseq | XP_020548743.1 | 0.0 | protein PHR1-LIKE 1-like isoform X1 | ||||
TrEMBL | A0A2G9H1I1 | 1e-174 | A0A2G9H1I1_9LAMI; Uncharacterized protein | ||||
STRING | Migut.F02036.1.p | 1e-150 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4582 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.2 | 7e-79 | G2-like family protein |