PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011076972.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GATA | ||||||||
Protein Properties | Length: 328aa MW: 35540.7 Da PI: 5.2429 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.3 | 1.9e-17 | 247 | 280 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + XP_011076972.1 247 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 280 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.3E-71 | 1 | 324 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 1.8E-16 | 241 | 291 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.451 | 241 | 277 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.4E-14 | 245 | 278 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 6.18E-15 | 245 | 304 | No hit | No description |
CDD | cd00202 | 6.97E-14 | 246 | 293 | No hit | No description |
Pfam | PF00320 | 4.0E-15 | 247 | 280 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 247 | 272 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MESNFVDEID CGSFFDQMDD LIEFPPDNDC GDGNLISSGD CEDFTNMWND ALPDADPFFS 60 GSHVDCASDL SAELSVPYED IVQLEWLSTF VEDSFSGGGL TIGKENLSID VESSRNPFRT 120 SSPVSVLESS SSSSSCSGGK TMPLSPSHRG TQRARSKRPR PPTFNPRTAI QLISPSSSSI 180 ETETPQPVFA LGFSSESDNF ADSPPKKKVP KPAETEQKKH KKIKITLPAD PTATRNDPPA 240 QAAVRKCLHC EITKTPQWRA GPMGPKTLCN ACGVRYKSGR LFPEYRPAAS PTFVPSLHSN 300 SHKKVIEMRS KVGPITQAAA PELVPNAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 160 | KRPRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011076972.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076972.1 | 0.0 | GATA transcription factor 8-like | ||||
Refseq | XP_011076974.1 | 0.0 | GATA transcription factor 8-like | ||||
TrEMBL | A0A2G9GV45 | 1e-150 | A0A2G9GV45_9LAMI; GATA transcription factor | ||||
STRING | XP_009598426.1 | 1e-138 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2345 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 1e-40 | GATA family protein |