PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076754.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 462aa    MW: 50271.5 Da    PI: 6.7471
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076754.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-164388147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++ Ed +l  +v ++G ++W++Iar ++ gR++k+c++rw + 
   XP_011076754.1 43 RGPWSPHEDAILSGLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 88
                     89******************************.***********985 PP
2Myb_DNA-binding56.56.4e-1895139147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd ++++a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
   XP_011076754.1  95 RKPFTDEEDHIILEAHAVHGNK-WAAIAKLLP-GRTDNAIKNHWNST 139
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.6463889IPR017930Myb domain
SuperFamilySSF466895.24E-3040136IPR009057Homeodomain-like
SMARTSM007174.9E-134291IPR001005SANT/Myb domain
PfamPF002499.5E-154388IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-254496IPR009057Homeodomain-like
CDDcd001671.41E-124587No hitNo description
PROSITE profilePS5129426.15390144IPR017930Myb domain
SMARTSM007174.5E-1694142IPR001005SANT/Myb domain
PfamPF002493.9E-1695139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2497143IPR009057Homeodomain-like
CDDcd001675.84E-1297140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MSEEKEDGEV KETPFEAEMD EAMVVDGGVG EAEDGGAVKG KVRGPWSPHE DAILSGLVSK  60
FGARNWSLIA RGIPGRSGKS CRLRWCNQLD PCVKRKPFTD EEDHIILEAH AVHGNKWAAI  120
AKLLPGRTDN AIKNHWNSTL RRRSVNFRKS TPATVQISPS TSTEQVKASS EETSLGGALN  180
SFKHLEELEH RSMVNQPSKA KDIAQITWNS HSLKPKSPNI SGGAVKSFRS SGLEDVKLME  240
QEQRRQFEGK IQASTGSCVL KQNPLTAETS YPSAEGSPPV VSRPVARIGA FNVYNSASHD  300
STSAGTDPLQ GPLFQASDVD FGICKFLDVA SGDPVVPLRC GHGCCAASSM HSSRSSLLGP  360
EFVEYEELPT FSSHELTSVA TDLNNIARIR SGLESTRRIP VHANGQIIPA CAPMHMDMEE  420
NVKNDKFLLE ERNLFAGTTR DVASNQRMMP TLTLRAQVEG LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-39421436107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076754.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076754.10.0transcription factor MYB25
TrEMBLA0A059PSL51e-146A0A059PSL5_SALMI; MYB-related transcription factor
STRINGMigut.F00722.1.p1e-152(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-86myb domain protein 109