PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076737.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 276aa    MW: 31014 Da    PI: 8.3476
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076737.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-091965347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+eE +++  a + +  +   +W ++a++++ g++ +++++ ++ +
   XP_011076737.1 19 TWTKEENKKFESALAIFDEKtpnRWFKVAAMIP-GKSVYDVINQYREL 65
                     7******************9*************.**********9965 PP

2Myb_DNA-binding39.61.3e-12117161347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ + +++G+g+W+ I+r +   +t+ q+ s+ qky
   XP_011076737.1 117 PWTEDEHRRFLLGLEKHGKGDWRNISRNFVISKTPTQVASHAQKY 161
                      8*****************************789***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.0641569IPR017884SANT domain
SMARTSM007175.6E-101668IPR001005SANT/Myb domain
SuperFamilySSF466891.35E-111872IPR009057Homeodomain-like
CDDcd001671.41E-81966No hitNo description
PfamPF002491.4E-71965IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-11107164IPR009057Homeodomain-like
PROSITE profilePS5129419.438110166IPR017930Myb domain
SuperFamilySSF466891.05E-15112165IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-17113165IPR006447Myb domain, plants
SMARTSM007178.3E-11114164IPR001005SANT/Myb domain
PfamPF002497.3E-11117161IPR001005SANT/Myb domain
CDDcd001671.52E-9117161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
METLCPSSGW MIHQGHSTTW TKEENKKFES ALAIFDEKTP NRWFKVAAMI PGKSVYDVIN  60
QYRELVADVS DIEAGLVPIP GYLASSFTLE LADHRGFDVY RKRAGRPCDH ERKKGVPWTE  120
DEHRRFLLGL EKHGKGDWRN ISRNFVISKT PTQVASHAQK YYLRQLSGGK DKKRPSIHDI  180
TTVSLTGTPP TESDRSPPLE KSNVGLITSD HNPTSAPKVV LDWNHNNNDE ALMVFNPSCV  240
DPFAAHPHDI ATHSRYVVSN VGSGPGFCMQ LPRFHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-131495586RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076737.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076737.10.0transcription factor DIVARICATA-like
RefseqXP_011076738.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-86DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A068V2E51e-115A0A068V2E5_COFCA; Uncharacterized protein
STRINGVIT_13s0019g03370.t011e-112(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-86MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]