PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011076737.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 276aa MW: 31014 Da PI: 8.3476 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.2 | 2.1e-09 | 19 | 65 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT+eE +++ a + + + +W ++a++++ g++ +++++ ++ + XP_011076737.1 19 TWTKEENKKFESALAIFDEKtpnRWFKVAAMIP-GKSVYDVINQYREL 65 7******************9*************.**********9965 PP | |||||||
2 | Myb_DNA-binding | 39.6 | 1.3e-12 | 117 | 161 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + +++G+g+W+ I+r + +t+ q+ s+ qky XP_011076737.1 117 PWTEDEHRRFLLGLEKHGKGDWRNISRNFVISKTPTQVASHAQKY 161 8*****************************789***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.064 | 15 | 69 | IPR017884 | SANT domain |
SMART | SM00717 | 5.6E-10 | 16 | 68 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.35E-11 | 18 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.41E-8 | 19 | 66 | No hit | No description |
Pfam | PF00249 | 1.4E-7 | 19 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-11 | 107 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.438 | 110 | 166 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-15 | 112 | 165 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-17 | 113 | 165 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 8.3E-11 | 114 | 164 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-11 | 117 | 161 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.52E-9 | 117 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
METLCPSSGW MIHQGHSTTW TKEENKKFES ALAIFDEKTP NRWFKVAAMI PGKSVYDVIN 60 QYRELVADVS DIEAGLVPIP GYLASSFTLE LADHRGFDVY RKRAGRPCDH ERKKGVPWTE 120 DEHRRFLLGL EKHGKGDWRN ISRNFVISKT PTQVASHAQK YYLRQLSGGK DKKRPSIHDI 180 TTVSLTGTPP TESDRSPPLE KSNVGLITSD HNPTSAPKVV LDWNHNNNDE ALMVFNPSCV 240 DPFAAHPHDI ATHSRYVVSN VGSGPGFCMQ LPRFHA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-13 | 14 | 95 | 5 | 86 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011076737.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076737.1 | 0.0 | transcription factor DIVARICATA-like | ||||
Refseq | XP_011076738.1 | 0.0 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-86 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A068V2E5 | 1e-115 | A0A068V2E5_COFCA; Uncharacterized protein | ||||
STRING | VIT_13s0019g03370.t01 | 1e-112 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 3e-86 | MYB family protein |
Publications ? help Back to Top | |||
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