PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076599.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 303aa    MW: 34442.1 Da    PI: 7.6743
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076599.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-183077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
   XP_011076599.1 30 RGPWTLEEDNLLIQYITCHGEGRWNSLAKCAGLKRTGKSCRLRWLNYL 77
                     89********************************************97 PP
2Myb_DNA-binding53.26.7e-1783126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+ E++l+++++ +lG++ W++Ia++++ gRt++++k++w++
   XP_011076599.1  83 RGNLTPHEQLLILELHSKLGNR-WSKIAQHLP-GRTDNEIKNYWRT 126
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6832577IPR017930Myb domain
SuperFamilySSF466893.26E-3128124IPR009057Homeodomain-like
SMARTSM007171.4E-142979IPR001005SANT/Myb domain
PfamPF002492.7E-163077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-233184IPR009057Homeodomain-like
CDDcd001671.17E-113277No hitNo description
PROSITE profilePS5129425.09178132IPR017930Myb domain
SMARTSM007174.6E-1582130IPR001005SANT/Myb domain
PfamPF002494.0E-1583126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2485131IPR009057Homeodomain-like
CDDcd001671.69E-1187126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MMMSCGKSRI PKSVRSSSLY EDGTDHQLRR GPWTLEEDNL LIQYITCHGE GRWNSLAKCA  60
GLKRTGKSCR LRWLNYLKPD IKRGNLTPHE QLLILELHSK LGNRWSKIAQ HLPGRTDNEI  120
KNYWRTRVQK QARQLKVDSN SKKFLEAIRM YWMPRLLEKM EQKNASVTSS PSSSISTLET  180
QKFTAPSPVF NQAPLPSSCP PPGTMVAHSD SNSCPEIPEI SGLLTPPGGQ PCSKISCSKS  240
TQDDCYRVDM IPSYDMQEFS QDIPDLSECH VAEVDWFGED LGSTFWETDD LWQFRKGEDQ  300
VGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-262713224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076599.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR7800921e-163KR780092.1 Rehmannia glutinosa R2R3-MYB protein (MYB16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076599.10.0transcription factor MYB62
SwissprotQ9C9G77e-86MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A0K1SB711e-139A0A0K1SB71_REHGL; R2R3-MYB protein
STRINGXP_009587217.14e-98(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-85myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]