PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076123.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 636aa    MW: 69194 Da    PI: 7.0896
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076123.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.66.1e-1082656353373
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++L+++A a+s+g+ e+a +lL+rl++ a+  g + qRla+y++ AL++r++     + +  p+se      +e++a+++++++vsP++k+++++
  XP_011076123.1 265 QTLIDAAVAISEGKPEAAAELLTRLQQVANAGGASEQRLASYMVSALNSRVNP----TEHPPPVSELY---GKEHAASTQMLYDVSPCFKLGFMA 352
                     89**************************************************9....44444555554...9*********************** PP

            GRAS  98 aNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     aN aIlea+ ++  +++H++Dfdi+qG+Q++ Ll+aLa+++     ++ ++lRiT++ + ++  +e+l+ +ge L+ +A+++gv+++f+v    +
  XP_011076123.1 353 ANLAILEATLEQgyDKIHVLDFDIGQGGQYVHLLHALAAKKkkldnKPFATLRITTFTDFAAAGEEKLKIVGEGLKALANRIGVSLNFHV-RNFN 446
                     ********977777************************8886775444559********9999**************************9.788* PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     ++dl+ e+L+v++ EalaVn++++l++++desv++e+ rde+L+ vk+lsP+v++vveqe+++n++++  r+ e+ eyy alfdsl+a+++res 
  XP_011076123.1 447 VSDLTHEKLEVQSTEALAVNFAFKLYKMPDESVTTENLRDELLRRVKGLSPTVMTVVEQEMNTNTAPLIPRVRETYEYYGALFDSLDATVSRESP 541
                     *********************************************************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     er+ +E   lgr+i n vaceg++r+er+e ++kWr+r+++aGF+p ++s+ aa++ ++ l+     + g++v+eesg +++gW++r+L+++SaW
  XP_011076123.1 542 ERVRIESG-LGRKIGNSVACEGRDRVERCEVFGKWRARMSMAGFNPRAMSQPAAESLRSKLNSGTrgNPGFTVNEESGGICFGWMGRTLTVASAW 635
                     ********.*************************************************999876556899************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.73237614IPR005202Transcription factor GRAS
PfamPF035142.1E-105265635IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MSSGFSGGVP DFFSAGRRST VMPTNMNSGY DTRLNPQLQF SFRSPLSGIL PDPDAQIHRT  60
DLIGKRSLAE FQQQQQNQQG LGFYLRNVKP RPNYQHASPI SPLSPVDFSS VPSTSPEVSS  120
GSSVSNSVNS RYGLPILQQH RPQSLTLSNR NVNNVSTRIS LPNLAVLQNK GFASPGVSLS  180
GPGLQVSAEE SEKNMMNHRL QELEKELLGD EEDGEAISVV TNSEWSETIQ SLMGPTQKPI  240
SPSPTSSSSS CSSTSASPAL PCPKQTLIDA AVAISEGKPE AAAELLTRLQ QVANAGGASE  300
QRLASYMVSA LNSRVNPTEH PPPVSELYGK EHAASTQMLY DVSPCFKLGF MAANLAILEA  360
TLEQGYDKIH VLDFDIGQGG QYVHLLHALA AKKKKLDNKP FATLRITTFT DFAAAGEEKL  420
KIVGEGLKAL ANRIGVSLNF HVRNFNVSDL THEKLEVQST EALAVNFAFK LYKMPDESVT  480
TENLRDELLR RVKGLSPTVM TVVEQEMNTN TAPLIPRVRE TYEYYGALFD SLDATVSRES  540
PERVRIESGL GRKIGNSVAC EGRDRVERCE VFGKWRARMS MAGFNPRAMS QPAAESLRSK  600
LNSGTRGNPG FTVNEESGGI CFGWMGRTLT VASAWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-392656356374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076123.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0553511e-53KJ055351.1 Sesamum indicum clone TilSSR_26552 microsatellite Sesame_26552 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076123.10.0scarecrow-like protein 8
TrEMBLA0A2G9I9L60.0A0A2G9I9L6_9LAMI; Uncharacterized protein
STRINGMigut.F01094.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-131SCARECROW-like 8