PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011076033.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ERF | ||||||||
Protein Properties | Length: 401aa MW: 45108.2 Da PI: 4.4924 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.8e-20 | 130 | 179 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdps r r +lg+++taeeAa +++a+ kl+g XP_011076033.1 130 KFRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 179 89*******.**********84....34*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.8E-30 | 129 | 186 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.4E-13 | 130 | 179 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.32E-33 | 130 | 186 | No hit | No description |
SuperFamily | SSF54171 | 2.16E-21 | 130 | 186 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-38 | 130 | 193 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.644 | 130 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 131 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 153 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MIAMDQSFLW PVKYTEHKRV SKKLIKPSKQ NLKKLPSDAR KLQEQRQHLN GPRTVRISVT 60 DPDATDSSSD EEDELFRRQR VKKYITEIRM ETAVAVSNAA RNRAVEILQP KTKPMKVKEV 120 PAVGRGGARK FRGVRQRPWG KWAAEIRDPS RRVRLWLGTY DTAEEAAMVY DNAAIKLRGP 180 DALTNFITPP AKDTSPEINV TSASGYDSGD ESHNQLSSPT SVLRFRSSQS SEEAEPTGLS 240 SQSSEYTEPS RSDPVQDLVK EEEPCDSVVG YFIDTKDDLN RLGCESGPIN GLARELEECQ 300 GETSMVPDYS TDHLPMDIPF LDNFFNFEPE NEPLFNDAPS FVNGFDEFTM CMDDFPALDS 360 NLGNVNYGDI KDSFQELCTL EVEDYFQDMS DFGSVDALLA I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-20 | 129 | 186 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011076033.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076033.1 | 0.0 | ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A022QD47 | 0.0 | A0A022QD47_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F00247.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 8e-51 | cytokinin response factor 4 |