PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075748.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 550aa    MW: 61021 Da    PI: 7.8208
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075748.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-055476123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C+ C+k F r  nL+ H r H
  XP_011075748.1 54 YICEVCHKGFQRDQNLQLHRRGH 76
                    89*******************88 PP
2zf-C2H212.90.00033130152123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H + +
  XP_011075748.1 130 WKCDKCSKRYAVQSDWKAHTKIC 152
                     58*****************9987 PP
3zf-C2H212.40.00047160178523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg++Fsrk+++++H   +
  XP_011075748.1 160 DCGTVFSRKDSFVTHRAFC 178
                     8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-55376IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.17E-65376No hitNo description
PROSITE profilePS5015710.7415476IPR007087Zinc finger, C2H2
SMARTSM003550.0385476IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
SMARTSM0035511095125IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4118151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.17E-6125150No hitNo description
SMARTSM00355130130150IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MSNFVQDFED EDDQFQSSTV VTQSSVASPN PTETDPNAEV VALSPRTLMA TNRYICEVCH  60
KGFQRDQNLQ LHRRGHNLPW KLKQRPNTQI KKRVYVCPEP NCVHHDPSRA LGDLTGIKKH  120
YCRKHGEKKW KCDKCSKRYA VQSDWKAHTK ICGTREYRCD CGTVFSRKDS FVTHRAFCDA  180
LSEENYKTNQ SIAASGGMMQ NQAQDLFSNT CTNTGTNILM NPSACIPQDH SLKPLSLNSH  240
GIMIPGSLDP FQNARTLSVN SKTMNAGLNN SNLALSSAYT SATALLQKAA EMGSKMSDTS  300
ISPILLRGFA GYSMNTSESF HDGSSNGDEM YTAANVVYAA GNLESSDKAS GRGEQTTSFD  360
IQHTRLYDLS AFMHSSAQNS NGISQRQVTV GDDQKMTVDF LGVEPPGAAH SSFSKKRRYE  420
DEITELGSIR SNLHDLHSGW SDRRFHERIN AVVQGHFPHP WPCLRQETEQ MKLFEQCYKK  480
KEDNNWSGPM AAEVALRGVL EAAGGSLASA HDQKPRFPHR IGGFGGDDGA VDVAGCSRGQ  540
EQRSSIRPWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-32126184361Zinc finger protein JACKDAW
5b3h_F5e-32126184361Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075748.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549139.10.0protein indeterminate-domain 12-like
TrEMBLA0A2C9VHA60.0A0A2C9VHA6_MANES; Uncharacterized protein
STRINGXP_002512692.11e-178(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1590056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-100indeterminate(ID)-domain 2