PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075645.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 353aa    MW: 39299.7 Da    PI: 8.8826
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075645.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEde+l+ +++q+G g+W++ + + g+ R++k+c++rw +yl
   XP_011075645.1 14 KGPWTREEDEKLLAYIQQHGHGSWRALPPKAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding49.11.3e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia+++  +Rt++++k++w+++l
   XP_011075645.1  67 RGKFSLQEEQTIIQLHALLGNR-WSAIASCLS-KRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-25564IPR009057Homeodomain-like
PROSITE profilePS5129416.86961IPR017930Myb domain
SuperFamilySSF466891.72E-2911108IPR009057Homeodomain-like
SMARTSM007171.9E-131363IPR001005SANT/Myb domain
PfamPF002494.4E-151461IPR001005SANT/Myb domain
CDDcd001671.41E-101661No hitNo description
PROSITE profilePS5129423.33162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2565117IPR009057Homeodomain-like
SMARTSM007172.2E-1566114IPR001005SANT/Myb domain
PfamPF002492.1E-1467112IPR001005SANT/Myb domain
CDDcd001672.04E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRSACCEKV GLKKGPWTRE EDEKLLAYIQ QHGHGSWRAL PPKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIASCLSKRT DNEIKNYWNT HLKKKLIKIG  120
LDPITHKPKY HALDCNQPKD IANLNHMAQW ESARLEAEAR IISESKLISD VYHSTATPPP  180
PRPPLLAPPP PPRPSCLDVL KVSQGAWGTP RKGVTITNSN GFSTTNAALT SVSSMLKFSD  240
TMLSASIDGV IHEHSFASDI INYVESPGAC AIGRITSENN QDGYQVKGIM DNSLQIHDMV  300
ADWLRFPSFL EGFTDLQSGS VVTGPADNAV SEDNTNSYWN NILLPSTHKW IRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075645.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075645.10.0transcription factor MYB28-like
SwissprotQ9LE631e-93MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2G9H6Z71e-149A0A2G9H6Z7_9LAMI; Uncharacterized protein
STRINGEOY018541e-110(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.21e-93myb domain protein 16