PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011075642.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 344aa MW: 38478.3 Da PI: 7.9419 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.4e-17 | 6 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl XP_011075642.1 6 KGPWTREEDQKLLAYIEEHGHGSWRSLPAKAGLLRCGKSCRLRWTNYL 53 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.2e-15 | 59 | 102 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ +t+E++ +++++++lG++ W++Ia++++ +Rt++++k++w++ XP_011075642.1 59 RGKLSTQEEKTIIRLHALLGNR-WSAIAAHLP-KRTDNEVKNYWNT 102 7999******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.213 | 1 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-28 | 3 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-14 | 5 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-16 | 6 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 7 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.01E-11 | 8 | 53 | No hit | No description |
SMART | SM00717 | 1.2E-14 | 58 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.733 | 58 | 108 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-14 | 59 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-24 | 61 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.40E-10 | 63 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 344 aa Download sequence Send to blast |
MVELKKGPWT REEDQKLLAY IEEHGHGSWR SLPAKAGLLR CGKSCRLRWT NYLRPDIKRG 60 KLSTQEEKTI IRLHALLGNR WSAIAAHLPK RTDNEVKNYW NTRLKKRLTR MGIDPVTYKP 120 KNNPDRHAAN LSHMAQWETA RLEAEARLVR ESKLLSKLHL LRKVTAPPPP PPPPQHPAAP 180 PCLDVLKVWR ATAVPENCFF GSPGSLESPT STLNFSTPST SGLTLTVPTV SSAAQNDVIS 240 MNNSGACGLG KANSYTEVKL RTMDNSSTTS QYLDSGNNLD DYHYVDFDYE YDHDYDMTGS 300 VDLASVNHNY EGYSTGGAVE FEDAADYWSE LLNLVRSPIE SPGL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 3 | 108 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011075642.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075642.1 | 0.0 | transcription factor MYB28-like isoform X2 | ||||
Swissprot | Q9LXF1 | 5e-90 | MYB16_ARATH; Transcription factor MYB16 | ||||
TrEMBL | A0A2G9H705 | 1e-142 | A0A2G9H705_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | Migut.L01264.1.p | 1e-130 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15310.1 | 3e-87 | myb domain protein 16 |
Publications ? help Back to Top | |||
---|---|---|---|
|