PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075642.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 344aa    MW: 38478.3 Da    PI: 7.9419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075642.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.4e-17653148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
   XP_011075642.1  6 KGPWTREEDQKLLAYIEEHGHGSWRSLPAKAGLLRCGKSCRLRWTNYL 53
                     79******************************99************97 PP

2Myb_DNA-binding49.21.2e-1559102146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ +t+E++ +++++++lG++ W++Ia++++ +Rt++++k++w++
   XP_011075642.1  59 RGKLSTQEEKTIIRLHALLGNR-WSAIAAHLP-KRTDNEVKNYWNT 102
                      7999******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.213157IPR017930Myb domain
SuperFamilySSF466891.12E-283100IPR009057Homeodomain-like
SMARTSM007173.3E-14555IPR001005SANT/Myb domain
PfamPF002499.9E-16653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-22760IPR009057Homeodomain-like
CDDcd001674.01E-11853No hitNo description
SMARTSM007171.2E-1458106IPR001005SANT/Myb domain
PROSITE profilePS5129418.73358108IPR017930Myb domain
PfamPF002491.2E-1459102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2461108IPR009057Homeodomain-like
CDDcd001672.40E-1063104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVELKKGPWT REEDQKLLAY IEEHGHGSWR SLPAKAGLLR CGKSCRLRWT NYLRPDIKRG  60
KLSTQEEKTI IRLHALLGNR WSAIAAHLPK RTDNEVKNYW NTRLKKRLTR MGIDPVTYKP  120
KNNPDRHAAN LSHMAQWETA RLEAEARLVR ESKLLSKLHL LRKVTAPPPP PPPPQHPAAP  180
PCLDVLKVWR ATAVPENCFF GSPGSLESPT STLNFSTPST SGLTLTVPTV SSAAQNDVIS  240
MNNSGACGLG KANSYTEVKL RTMDNSSTTS QYLDSGNNLD DYHYVDFDYE YDHDYDMTGS  300
VDLASVNHNY EGYSTGGAVE FEDAADYWSE LLNLVRSPIE SPGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2831084108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075642.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075642.10.0transcription factor MYB28-like isoform X2
SwissprotQ9LXF15e-90MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A2G9H7051e-142A0A2G9H705_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.L01264.1.p1e-130(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.13e-87myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]