PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011075641.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 388aa MW: 43182.2 Da PI: 9.3139 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+l+ +++q+G g+W++ + + g++R++k+c++rw +yl XP_011075641.1 14 KGPWTREEDEKLLAYIQQHGHGSWRALPPKAGLKRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.1e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W+tIa+++ +Rt++++k++w+++l XP_011075641.1 67 RGKFSLQEEQTIIQLHALLGNR-WSTIASYLS-NRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.305 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.74E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.22E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.839 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.83E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MGRSACCEKV GLKKGPWTRE EDEKLLAYIQ QHGHGSWRAL PPKAGLKRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS TIASYLSNRT DNEIKNYWNT HLKKKIIKMG 120 LDPITHKPRN HAPGCGQTKD IANLSHMAQW ESARLEAEAR IVRESKLVSN VYRYTIAPPP 180 PPQPSSVVPP PPSRPTCLDV LKVWQGVWGT PRKDATIANF NGLPPCLDVL KVWQGIWGTP 240 RKDVTIANFN GFPTSNTAIT SPTSILKFSD SMATTSKNGV THEPSFASSD IINYVESPGA 300 CVVGRNITSD NNQDGYHVKG IMKNSPPQIH DMIADWLRYP SFLEGFSDLP PGSATAPVDN 360 GLSEEDNKIS YWSNILTALD SPMDSPVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-26 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011075641.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075641.1 | 0.0 | myb-related protein 306-like | ||||
TrEMBL | A0A2G9H6Z7 | 1e-145 | A0A2G9H6Z7_9LAMI; Uncharacterized protein | ||||
STRING | XP_010258093.1 | 1e-112 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 3e-97 | myb domain protein 16 |