PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075641.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 388aa    MW: 43182.2 Da    PI: 9.3139
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075641.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEde+l+ +++q+G g+W++ + + g++R++k+c++rw +yl
   XP_011075641.1 14 KGPWTREEDEKLLAYIQQHGHGSWRALPPKAGLKRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding51.62.1e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W+tIa+++  +Rt++++k++w+++l
   XP_011075641.1  67 RGKFSLQEEQTIIQLHALLGNR-WSTIASYLS-NRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.305961IPR017930Myb domain
SuperFamilySSF466895.74E-3011108IPR009057Homeodomain-like
SMARTSM007171.4E-141363IPR001005SANT/Myb domain
PfamPF002492.3E-151461IPR001005SANT/Myb domain
CDDcd001677.22E-111661No hitNo description
PROSITE profilePS5129425.83962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2565117IPR009057Homeodomain-like
SMARTSM007178.6E-1666114IPR001005SANT/Myb domain
PfamPF002494.8E-1567112IPR001005SANT/Myb domain
CDDcd001671.83E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGRSACCEKV GLKKGPWTRE EDEKLLAYIQ QHGHGSWRAL PPKAGLKRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS TIASYLSNRT DNEIKNYWNT HLKKKIIKMG  120
LDPITHKPRN HAPGCGQTKD IANLSHMAQW ESARLEAEAR IVRESKLVSN VYRYTIAPPP  180
PPQPSSVVPP PPSRPTCLDV LKVWQGVWGT PRKDATIANF NGLPPCLDVL KVWQGIWGTP  240
RKDVTIANFN GFPTSNTAIT SPTSILKFSD SMATTSKNGV THEPSFASSD IINYVESPGA  300
CVVGRNITSD NNQDGYHVKG IMKNSPPQIH DMIADWLRYP SFLEGFSDLP PGSATAPVDN  360
GLSEEDNKIS YWSNILTALD SPMDSPVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075641.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075641.10.0myb-related protein 306-like
TrEMBLA0A2G9H6Z71e-145A0A2G9H6Z7_9LAMI; Uncharacterized protein
STRINGXP_010258093.11e-112(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.13e-97myb domain protein 16