PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075638.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 363aa    MW: 40993.5 Da    PI: 7.2904
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075638.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-16104149147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
   XP_011075638.1 104 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 149
                      899*****************************.***********996 PP

2Myb_DNA-binding56.56.5e-18156199146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
   XP_011075638.1 156 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 199
                      678*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.20199150IPR017930Myb domain
SMARTSM007173.3E-14103152IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-28104197IPR009057Homeodomain-like
PfamPF002495.8E-16104149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-26105157IPR009057Homeodomain-like
CDDcd001679.85E-13107148No hitNo description
PROSITE profilePS5129427.288151205IPR017930Myb domain
SMARTSM007172.1E-14155203IPR001005SANT/Myb domain
PfamPF002492.2E-14156198IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-21158204IPR009057Homeodomain-like
CDDcd001673.03E-11158198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGSNKYCVSS IYPPDLGFLS INPNFETKNS NSWCKLSKDN WGFPFLEETH NSDHRQGNNY  60
KGSDSSDDNE IIDLNASLNE EDQDNCNMHK DSNSASGQSK LCARGHWRPA EDTKLKELVA  120
LYGPQNWNLI AEKLEGRSGK SCRLRWFNQL DPRINRRAFT EEEEERLMAA HRLYGNKWAM  180
IARLFPGRTD NAVKNHWHVI MARKYREQSS AYRRRKMGQF VFKRKEDDHH DFLPVNGNAL  240
LPNFGGGLMY NSAGGGGLSC SVKMDGGGGR EATPNKKGFW TPQTPLGFFP GPSSSEMMSI  300
FNHNKSWDET NSYPLINPIQ QSLQSNFASP QEVSAIDEYP TSSEERTAPQ FIDFLGVGAL  360
SKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-321042047107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075638.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075638.10.0myb-like protein Q
SwissprotQ9SEZ47e-77MY105_ARATH; Transcription factor MYB105
TrEMBLA0A2G9I2T91e-144A0A2G9I2T9_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.E00083.1.p1e-115(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-79myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]